| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 14,629,919 – 14,630,015 |
| Length | 96 |
| Max. P | 0.550830 |
| Location | 14,629,919 – 14,630,015 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 75.04 |
| Mean single sequence MFE | -20.61 |
| Consensus MFE | -7.59 |
| Energy contribution | -8.68 |
| Covariance contribution | 1.10 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.37 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.550830 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14629919 96 - 27905053 UGGGCUUGUUUUGCUGGGCAAAGCCAACGAAAAAAAAAAAAAUGGCAAGGAAAUACUAUAUAUAGUAUGUGGCACGACCCAGAGAAUCCACACAA-A (((..((......((((((...((((................))))......((((((....)))))).......).))))).))..))).....-. ( -19.29) >DroSec_CAF1 44990 93 - 1 UGGGCUUGUUUUGCUGGGCAAAGCCAACAAAAA---AAAAAAUGGCAAGGAAAUACUAUAUAUAGUAUGUGGCACGGCCCAGAGAAUCCACACAA-A (((..((......((((((...((((.......---................((((((....)))))).))))...)))))).))..))).....-. ( -23.45) >DroSim_CAF1 52845 92 - 1 UGGGCUUGUUUUGCUGGGCAAAGCCAACCAAAA----AAAAAUGACAAGGAAAUACUAUAUAUAGUAUGUGGCACGGCCCAGAGAAUCCACACAA-A (((..((......((((((...((((.((....----...........))..((((((....)))))).))))...)))))).))..))).....-. ( -24.96) >DroEre_CAF1 43693 86 - 1 UGGUCGUGUUUUGCUGGGCAAAGCCA-----------AAAAAUGGCAAGGAAAUACCAUAUAUAGUAUGUGGUACGGCCGAAAGAAUCCACACAAAA .....(((((((((...)))))((((-----------.....))))..(((..(((((((((...)))))))))....(....)..))))))).... ( -23.30) >DroYak_CAF1 45493 83 - 1 UGGGCUUGUUUUGCUGGGCAAAGCCG-----------AAAAAAGGCAAGGAAAUGCCGUAUAUAGUAUGUGGUACGGCCGAAAGAAUCCACACA--- ((((((((((((..(.(((...))).-----------)...)))))))).....(((((((..........)))))))(....)..))))....--- ( -22.60) >DroPer_CAF1 45717 74 - 1 ----CUUGUUUUCCCUGCCAAAGCCAAAGCCA-----AAAACUGGAAUGGAAU----AUCUACAAAACGAG------CCAAAAUCCUCCACAG---- ----((((((((...........(((...(((-----.....)))..)))...----......))))))))------................---- ( -10.05) >consensus UGGGCUUGUUUUGCUGGGCAAAGCCAAC_AAA_____AAAAAUGGCAAGGAAAUACUAUAUAUAGUAUGUGGCACGGCCCAAAGAAUCCACACAA_A (((....(((((((...)))))))........................((.....((((((.....)))))).....))........)))....... ( -7.59 = -8.68 + 1.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:38 2006