Locus 5538

Sequence ID 3R_DroMel_CAF1
Location 14,626,343 – 14,626,439
Length 96
Max. P 0.822305
window9032

overview

Window 2

Location 14,626,343 – 14,626,439
Length 96
Sequences 5
Columns 102
Reading direction forward
Mean pairwise identity 91.07
Mean single sequence MFE -19.82
Consensus MFE -14.94
Energy contribution -15.58
Covariance contribution 0.64
Combinations/Pair 1.04
Mean z-score -2.05
Structure conservation index 0.75
SVM decision value 0.69
SVM RNA-class probability 0.822305
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14626343 96 + 27905053
GUGCAGCAUUUUUCUAUUAAUGUAAAUUUAUGGCUUAUGCUUUCCAUUUGCUUAAC-----AAUUGGAUU-UUUGCUAGUUUCAUGUUUCCGAUGUUGCUUA
..((((((((......((((.((((((....(((....)))....)))))))))).-----....(((..-(.((.......)).)..)))))))))))... ( -18.40)
>DroSec_CAF1 41512 102 + 1
GUGCAGCAUUUUUCUAUUAAUGUAAAUUUAUGGCUUAUGCUUGCCAUUUGCUUAACACAUCAAUUGGAUUUUUUGCUAGUUUCAUGUUUGCGAUGUUGCUUA
..((((((((...................(((((........)))))..((..((((....((((((........))))))...)))).))))))))))... ( -21.60)
>DroSim_CAF1 49350 102 + 1
GUGCAGCAUUUUUCUAUUAAUGUAAAUUUAUGGCUUAUGCUUGCCAUUUGCUUAACACAUCAAUUGGAUUUUUUGCUAGUUUCAUGUUUCCGAUGUUGCUUA
..((((((((......((((.((((....(((((........))))))))))))).((((.((((((........))))))..))))....))))))))... ( -21.00)
>DroEre_CAF1 40232 101 + 1
GUGCAGCAUUCUUCUAUUAAUGUAAAUUUAUGGCUUACGCUUUCUAUUUGCUUUACACAUCAUUUGUAUUUU-UUCUAGUUUCAUGUUUCUGAUGUUGCUUA
..((((((((.......(((.((((((....(((....)))....)))))).))).(((.....))).....-..................))))))))... ( -16.50)
>DroYak_CAF1 42065 101 + 1
GUGCAGCAUUCUUCUAUUAAUGUAAAUUUAUGGCUUAUGCCUUCCAUUUGCUUUACACAUCAUUUGGAUUUU-UUCUAGUUUCAUGUUUCGGAUGUUGGUUA
...((((((((......(((.((((((....(((....)))....)))))).))).((((...(((((....-.)))))....))))...)))))))).... ( -21.60)
>consensus
GUGCAGCAUUUUUCUAUUAAUGUAAAUUUAUGGCUUAUGCUUUCCAUUUGCUUAACACAUCAAUUGGAUUUUUUGCUAGUUUCAUGUUUCCGAUGUUGCUUA
..((((((((...........((((((....(((....)))....))))))..........((((((........))))))..........))))))))... (-14.94 = -15.58 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:35 2006