Locus 5535

Sequence ID 3R_DroMel_CAF1
Location 14,611,657 – 14,611,758
Length 101
Max. P 0.546546
window9027

overview

Window 7

Location 14,611,657 – 14,611,758
Length 101
Sequences 4
Columns 101
Reading direction reverse
Mean pairwise identity 87.29
Mean single sequence MFE -20.05
Consensus MFE -12.47
Energy contribution -13.79
Covariance contribution 1.31
Combinations/Pair 1.17
Mean z-score -2.10
Structure conservation index 0.62
SVM decision value 0.03
SVM RNA-class probability 0.546546
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14611657 101 - 27905053
UAACCACAUAAUGAGUACACGCUUUACUUAUCCACAAAUAGAGAAAGUAAACCUGGCAUUUCUUUAUUUGUGUUGACAGACUUCAAAGUGCUAAAAUAAAU
.............(((((..............((((((((((((((((.......)).))))))))))))))((((......)))).)))))......... ( -21.60)
>DroSec_CAF1 25999 101 - 1
UAACCACAUAAUUAGUACUCGCUUUACUUAUGCACAAAUAGAGAAAGUAAACCUGACAUUUGUUUAUUUGUGUUGACAGACUUUAAAGUGCUAAAAUAAAU
...........((((((((............(((((((((((.(((((.......)).))).))))))))))).............))))))))....... ( -20.41)
>DroSim_CAF1 34885 101 - 1
UAACCACAUAAUUAGUACUCGCUUUACUUAUACACAAAUAGAGAAAGUAAACCCGACAUUUGUUUAUUUGUGUUGACAGACUUUAAAGUGCUAAAAUAAAU
...........((((((((............(((((((((((.(((((.......)).))).))))))))))).............))))))))....... ( -20.11)
>DroEre_CAF1 26059 97 - 1
UAACCACAUACUUAGUACUCACUUU----GUCCACAAAUAGAGUUAGUGGACGUAGCAUUUGUUUAUUUGUGUUGACAGACUUGAAAAAGUUAGAAUAAAU
...(.(((((..(((.((...((.(----((((((.(((...))).))))))).)).....)))))..))))).)...(((((....)))))......... ( -18.10)
>consensus
UAACCACAUAAUUAGUACUCGCUUUACUUAUCCACAAAUAGAGAAAGUAAACCUGACAUUUGUUUAUUUGUGUUGACAGACUUUAAAGUGCUAAAAUAAAU
...........((((((((............(((((((((((.(((((.......)).))).))))))))))).............))))))))....... (-12.47 = -13.79 +   1.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:30 2006