| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 14,592,421 – 14,592,518 |
| Length | 97 |
| Max. P | 0.608246 |
| Location | 14,592,421 – 14,592,518 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 71.80 |
| Mean single sequence MFE | -19.85 |
| Consensus MFE | -11.47 |
| Energy contribution | -11.27 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.608246 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14592421 97 + 27905053 AUGCAUUCUUUUGAUAUU-----------UA-----AUCAUUUUGAUAAUCAUA-UUAGUAAUAUUAAGAAAGAAUGGGUAUGACUUGGCCCACUGGUUUAACUAUACCAUUCU ...(((((((((((((((-----------..-----......((((((....))-)))).))))))..)))))))))((((((....((((....))))....))))))..... ( -18.80) >DroSec_CAF1 7112 92 + 1 AUGUAUUCUUUUGAUAAC-----------UA-----GUGCU-----UAGUUAUACUUUGUAAU-UUAAGAUAGAAUGGGUAUGACUUGGCCUACUGGUUUUACUAUACCAUUAU ..((((.........(((-----------((-----(((((-----.((((((((((....((-((......)))))))))))))).)))..))))))).....))))...... ( -19.14) >DroSim_CAF1 7057 91 + 1 -UAUUUUCUUUUGAUAAC-----------UA-----GUGCU-----UAGUUAUACUUUGUAAU-UUAAGAUAGAAUGGGUAUGACUUGGCCUACUGGUUUUACUGUACCAUUCU -..............(((-----------((-----(((((-----.((((((((((....((-((......)))))))))))))).)))..)))))))............... ( -18.40) >DroEre_CAF1 7031 108 + 1 AAGUAUUCUUUUGAUAUUUGAUAACCAUAUAGUGUAGUGUU-----CGGUGGUACUUCAUGAU-UUACAAAAGAAUGGGUAUUAUUUAGCCUACUGGCUUUACUACACCAUUCU ....(((((((((..((((((..(((((...(.........-----).)))))...))).)))-...)))))))))(((((.((...((((....)))).)).))).))..... ( -23.10) >DroYak_CAF1 7989 100 + 1 AAGUAUUUUUUUGAUUUUUGAU---CAUAUG-----GUGGU-----CAGAUAUGCAUUACAAU-UUAAGAAAGAAUGGGCAUUAUUUAGCCUACUGGUUUUACUACACCAUUCU ..(((......((...((((((---(((...-----)))))-----))))....)).)))...-.......(((((((.........((((....))))........))))))) ( -19.83) >consensus AUGUAUUCUUUUGAUAUU___________UA_____GUGCU_____UAGUUAUACUUUGUAAU_UUAAGAAAGAAUGGGUAUGACUUGGCCUACUGGUUUUACUAUACCAUUCU .......................................................................(((((((.........((((....))))........))))))) (-11.47 = -11.27 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:28 2006