Locus 5532

Sequence ID 3R_DroMel_CAF1
Location 14,590,289 – 14,590,381
Length 92
Max. P 0.531732
window9023

overview

Window 3

Location 14,590,289 – 14,590,381
Length 92
Sequences 6
Columns 92
Reading direction forward
Mean pairwise identity 86.08
Mean single sequence MFE -27.20
Consensus MFE -21.07
Energy contribution -21.07
Covariance contribution 0.00
Combinations/Pair 1.08
Mean z-score -1.98
Structure conservation index 0.77
SVM decision value -0.00
SVM RNA-class probability 0.531732
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14590289 92 + 27905053
GAAAUGUAAGUGCCGCAAAGUAUGCAAUAAUUGCUGCAGCCAUGCCAGCGGGCAAGCAAUUACCAGCAAGGACACUCGCAGCUGGCGGCUGC
.....((((.....(((.....))).....)))).((((((..((((((.((.((....)).)).((.((....)).)).)))))))))))) ( -31.70)
>DroPse_CAF1 4966 80 + 1
GAAAUGUAAGUGCCGCAAAGUAUGUAAUAAUUGAUGCAGCCCUGUCAGCGGGCAAGCAAUUACCAGCCAGG-CACUCUCAU-----------
...(((..(((((((((.....)))..((((((.....((((.......))))...)))))).......))-))))..)))----------- ( -22.40)
>DroEre_CAF1 4905 92 + 1
GAAAUGUAAGUGCCGCAAAGUAUGCAAUAAUUGCUGCAGCCAUGCCAGCGGGCAAGCAAUUACCAGCAAGGACACUCGCAGCUCCCGGCUGC
........(((((((((.....)))..((((((((...(((.((....))))).)))))))).......)).)))).(((((.....))))) ( -29.20)
>DroYak_CAF1 5882 92 + 1
GAAAUGUAAGUGCCGCAAAGUAUGCAAUAAUUGCUGCAGCCAUGCCAGCGGGCAAGCAAUUACCAGCAAGGACACUCGCAGCUCCCGGCUGC
........(((((((((.....)))..((((((((...(((.((....))))).)))))))).......)).)))).(((((.....))))) ( -29.20)
>DroAna_CAF1 4711 87 + 1
GAAAUGUAAGUGCCGCAAAGUAUGCAAUAAUUGCUGCAACCAUGCCAGCGGGUAAGCAAUUACCAGCAAGGACACUUGCUCCCCCCG-----
.....((((((((((((..((.((((........))))))..)))..((.(((((....))))).))..)).)))))))........----- ( -28.30)
>DroPer_CAF1 5097 80 + 1
GAAAUGUAAGUGCCGCAAAGUAUGUAAUAAUUGAUGCAGCCCUGUCAGCGGGCAAGCAAUUACCAGCCAGG-CACUCUCAU-----------
...(((..(((((((((.....)))..((((((.....((((.......))))...)))))).......))-))))..)))----------- ( -22.40)
>consensus
GAAAUGUAAGUGCCGCAAAGUAUGCAAUAAUUGCUGCAGCCAUGCCAGCGGGCAAGCAAUUACCAGCAAGGACACUCGCAGCUCCCG_____
....((..(((((((((.....)))..((((((((...(((.((....))))).)))))))).......)).))))..))............ (-21.07 = -21.07 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:27 2006