Locus 5530

Sequence ID 3R_DroMel_CAF1
Location 14,586,579 – 14,586,677
Length 98
Max. P 0.689247
window9019

overview

Window 9

Location 14,586,579 – 14,586,677
Length 98
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 79.51
Mean single sequence MFE -17.70
Consensus MFE -11.01
Energy contribution -11.90
Covariance contribution 0.89
Combinations/Pair 1.20
Mean z-score -1.65
Structure conservation index 0.62
SVM decision value 0.32
SVM RNA-class probability 0.689247
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14586579 98 + 27905053
CCAGAGAUCCAGGAGAUGGAAAAGAAGAAGAAGACCAAAGGCACAUUGGUCAGCAUAACUCUGCAAAAUCAGAUAAGAUUUUUUAAUUAAUUAAUAGA
.(((((.((((.....))))............((((((.......)))))).......))))).((((((......))))))................ ( -19.70)
>DroSec_CAF1 1427 87 + 1
CCAGAGAUCCAGGAGAUGGAAAAGAAGAAGAACACCAAAGGCACGUUGGUGAGCAUUACACUGAAAAAUGAGAUAAGAUU-----------UAAUAUA
.(((...((((.....)))).........(..((((((.......))))))..)......))).................-----------....... ( -13.30)
>DroSim_CAF1 1388 87 + 1
CCAGAGAUCCAGGAGAUGGAAAAGAAGAAGAACACCAAAGGCACAUUGGUGAGCAUUACACUGAAAAAUUAGAUAAGAUU-----------UAAUAUA
.(((...((((.....)))).........(..((((((.......))))))..)......)))....(((((((...)))-----------))))... ( -13.90)
>DroEre_CAF1 1398 97 + 1
CCAGAGAUCCAGGAGAUGGAAAAGAAGAAGAACACCAAUGGCACAUUGGUCAGCAUCACUCUGCAAGAUAUGAUAAGAUAUUUCAA-UAACUAAUAGA
.(((((.((((.....))))......((.(...(((((((...)))))))...).)).)))))..((((((......))))))...-........... ( -18.50)
>DroYak_CAF1 1347 96 + 1
CCAGAGAUCCAGGAGAUGGAAAAGAAGAAGAACACCAAUGGAACAUUGGUCAGCAUUACUCUGCAAGAUAGCAUAAGAU-UUUUAA-CAAUUAAUAGA
.(((((.((((.....)))).........(...(((((((...)))))))...)....)))))................-......-........... ( -16.60)
>DroAna_CAF1 1327 84 + 1
CCGGAUAGCCAGGAGAGCGAAAAGAAGAGGAACACCAGGGGAACAUUGGUGAGCAUCACUCUGCAAAGUAAGA---GCUU-----------GGUUAUA
....(((((((((.............((.(..(((((((....).))))))..).)).((((........)))---))))-----------)))))). ( -24.20)
>consensus
CCAGAGAUCCAGGAGAUGGAAAAGAAGAAGAACACCAAAGGCACAUUGGUCAGCAUUACUCUGCAAAAUAAGAUAAGAUU___________UAAUAGA
.(((((.((((.....))))............((((((.......)))))).......)))))................................... (-11.01 = -11.90 +   0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:23 2006