Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,060,860 – 2,060,969 |
Length | 109 |
Max. P | 0.998793 |
Location | 2,060,860 – 2,060,969 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 81.69 |
Mean single sequence MFE | -28.79 |
Consensus MFE | -18.98 |
Energy contribution | -20.18 |
Covariance contribution | 1.20 |
Combinations/Pair | 1.19 |
Mean z-score | -3.96 |
Structure conservation index | 0.66 |
SVM decision value | 3.23 |
SVM RNA-class probability | 0.998793 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2060860 109 + 27905053 UUCUUUACAGCUUCCUGUCAAGCUGCAACUAU-UUCGCAAUAAUCAAUUUUGAAAAGAGUGUGUAGUUUGCCAAACACAAUUGACACCUGACAGGAAGAUGUGAA-AACAA ...((((((.((((((((((((((((((((.(-((((.(((.....))).)))))..))).))))))))..(((......)))......))))))))).))))))-..... ( -32.00) >DroSec_CAF1 204800 98 + 1 UUCUUUACAGCUUCCUGUCGAGCUGAAAUUAU-UUCCCAAUAAUCAAUAUUUAAAAGAGUGUGUAAUUUGCCACAUACAAUUGACACCUGACAGGAAGA------------ ..........(((((((((.((.((..(((((-(....))))))..............((((((........))))))......)).))))))))))).------------ ( -22.40) >DroSim_CAF1 209880 110 + 1 UUCUUUACAGCUUCCUGUCGAGCUGCAAUUAU-UUCGCAAUAAUCAAUAUUUAAAAGAGUGUGUAAUUUGCCAGAUACAAUUGACACCUGACAGGAAGAUGUGAAAAACAA ...((((((.(((((((((.((.(((((((((-((.((((......((((((....)))))).....)))).)))))..)))).)).))))))))))).))))))...... ( -33.10) >DroEre_CAF1 204710 104 + 1 UUCUUCGCAGCUUCCUGUCAU-----AAUAAUAAUCACAAUAAUCAAUGUUUAAUAGAGUGUGCAGUCUACCAGCUAAAAUUGA--CCUGACAGGAAGAUGUGAAAAUCAA ...((((((.((((((((((.-----.........((((....((.((.....)).)).))))..(((..............))--).)))))))))).))))))...... ( -27.14) >DroYak_CAF1 207853 110 + 1 UUCUUCACAGCUUCCUGUCAAGCUGCAAUUAU-UUCACAAUAAUCUAUAUUUAACAGAGUGUUCAGCCUACCAGAUACAAUUGACACCUGACAGGAAGAUGUGAAAAUCAA ...((((((.((((((((((.(.(((((((..-..........(((.........)))(((((..(....)..)))))))))).))).)))))))))).))))))...... ( -29.30) >consensus UUCUUUACAGCUUCCUGUCAAGCUGCAAUUAU_UUCACAAUAAUCAAUAUUUAAAAGAGUGUGUAGUUUGCCAGAUACAAUUGACACCUGACAGGAAGAUGUGAAAAACAA ...((((((.((((((((((.......................((...........))((((.(((((..........))))))))).)))))))))).))))))...... (-18.98 = -20.18 + 1.20)
Location | 2,060,860 – 2,060,969 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 81.69 |
Mean single sequence MFE | -32.01 |
Consensus MFE | -19.97 |
Energy contribution | -21.98 |
Covariance contribution | 2.01 |
Combinations/Pair | 1.12 |
Mean z-score | -3.83 |
Structure conservation index | 0.62 |
SVM decision value | 3.03 |
SVM RNA-class probability | 0.998197 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2060860 109 - 27905053 UUGUU-UUCACAUCUUCCUGUCAGGUGUCAAUUGUGUUUGGCAAACUACACACUCUUUUCAAAAUUGAUUAUUGCGAA-AUAGUUGCAGCUUGACAGGAAGCUGUAAAGAA ...((-((.(((.((((((((((((((((((((((((.(((....))).)))).........)))))))...(((((.-....)))))))))))))))))).))).)))). ( -35.60) >DroSec_CAF1 204800 98 - 1 ------------UCUUCCUGUCAGGUGUCAAUUGUAUGUGGCAAAUUACACACUCUUUUAAAUAUUGAUUAUUGGGAA-AUAAUUUCAGCUCGACAGGAAGCUGUAAAGAA ------------.(((((((((..((...((((((.((((........))))...(((..((((.....))))..)))-))))))...))..))))))))).......... ( -24.70) >DroSim_CAF1 209880 110 - 1 UUGUUUUUCACAUCUUCCUGUCAGGUGUCAAUUGUAUCUGGCAAAUUACACACUCUUUUAAAUAUUGAUUAUUGCGAA-AUAAUUGCAGCUCGACAGGAAGCUGUAAAGAA ...(((((.(((.(((((((((((.((.(((((((.((..((((...........................)))))).-))))))))).)).))))))))).)))))))). ( -29.93) >DroEre_CAF1 204710 104 - 1 UUGAUUUUCACAUCUUCCUGUCAGG--UCAAUUUUAGCUGGUAGACUGCACACUCUAUUAAACAUUGAUUAUUGUGAUUAUUAUU-----AUGACAGGAAGCUGCGAAGAA ....(((((.((.(((((((((.((--(((((.((...(((((((........))))))))).)))))))...(((((....)))-----))))))))))).)).))))). ( -29.40) >DroYak_CAF1 207853 110 - 1 UUGAUUUUCACAUCUUCCUGUCAGGUGUCAAUUGUAUCUGGUAGGCUGAACACUCUGUUAAAUAUAGAUUAUUGUGAA-AUAAUUGCAGCUUGACAGGAAGCUGUGAAGAA ....((((((((.(((((((((((((..(((((((.((((((((......)..(((((.....))))).))))).)).-)))))))..))))))))))))).)))))))). ( -40.40) >consensus UUGAUUUUCACAUCUUCCUGUCAGGUGUCAAUUGUAUCUGGCAAACUACACACUCUUUUAAAUAUUGAUUAUUGCGAA_AUAAUUGCAGCUUGACAGGAAGCUGUAAAGAA .........(((.(((((((((((((((((........))))..............................(((((......)))))))))))))))))).)))...... (-19.97 = -21.98 + 2.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:57 2006