Locus 5529

Sequence ID 3R_DroMel_CAF1
Location 14,584,929 – 14,585,028
Length 99
Max. P 0.836704
window9018

overview

Window 8

Location 14,584,929 – 14,585,028
Length 99
Sequences 5
Columns 112
Reading direction reverse
Mean pairwise identity 85.81
Mean single sequence MFE -19.17
Consensus MFE -14.96
Energy contribution -15.24
Covariance contribution 0.28
Combinations/Pair 1.15
Mean z-score -1.90
Structure conservation index 0.78
SVM decision value 0.74
SVM RNA-class probability 0.836704
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14584929 99 - 27905053
------AUUUCAUUCGCAUGUACUUAACGCAUAUGUGUGUGCGUGUCAGCAUGCAAUAAAUAAAGACAAAUAAACGUAUUUUUUAUAAA--AAA--CAAACACA--AA-GAA
------......(((((((((.....(((((((....)))))))....)))))).....................((.((((....)))--).)--).......--..-))) ( -18.30)
>DroSec_CAF1 13233 98 - 1
------AUUUCAUUCGCAUGUACUUAACGCAUAUGUGUGUGCGUGGCAGCAUGCAAUAAAUAAAGACAAAUAAACGUAUUUU-UAUAAA--AAA--CAAACAUA--AU-AAA
------.........((((((.....(((((((....)))))))....))))))............................-......--...--........--..-... ( -17.50)
>DroSim_CAF1 12558 100 - 1
------AUUUCAUUCGCAUGUACUUAACGCAUAUGUGUGUGCGUGGCAGCAUGCAAUAAAUAAAGACAAAUAAACGUAUUUU-UAUAAAAAAAA--CAAACACA--AA-GAA
------......(((((((((.....(((((((....)))))))....)))))).....(((((((............))))-)))........--........--..-))) ( -17.90)
>DroEre_CAF1 12541 97 - 1
------AUUUCAUUCGCAUGUACUUAACGCAUAUGUGUGUGCGUGGCAGCAUGCAAUAAAUAAAGACAAAUAAACGUAUUUU-UAUAAA--AA---CUCACCCG--AA-GAA
------..(((.(((((((((.....(((((((....)))))))....)))))).....(((((((............))))-)))...--..---.......)--))-))) ( -19.50)
>DroAna_CAF1 18874 107 - 1
AAUCGAGUUUCAUUCGCAUGUACUUAUCGCA--UGUGUGUGCGUGACAGUGUGCAAUAAAUAAAGACAAAUAAACGUAUUUU-UGUACA--AAUCACAAAACUGUGUACUAA
.....((((((((.(((((((.......)))--)))).))).((((...(((((((.(((((..............))))))-))))))--..)))).)))))......... ( -22.64)
>consensus
______AUUUCAUUCGCAUGUACUUAACGCAUAUGUGUGUGCGUGGCAGCAUGCAAUAAAUAAAGACAAAUAAACGUAUUUU_UAUAAA__AAA__CAAACACA__AA_GAA
...............((((((.....(((((((....)))))))....)))))).......................................................... (-14.96 = -15.24 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:22 2006