| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 14,582,325 – 14,582,445 |
| Length | 120 |
| Max. P | 0.606593 |
| Location | 14,582,325 – 14,582,445 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 78.50 |
| Mean single sequence MFE | -44.62 |
| Consensus MFE | -22.65 |
| Energy contribution | -20.90 |
| Covariance contribution | -1.74 |
| Combinations/Pair | 1.48 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.51 |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.606593 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14582325 120 + 27905053 GCAUCCAAGGUGCCGAAGGGCAGCGUGGAAAAGUAUUGCCAUGUGCCCAGGUUUCGGGUGCGGUAGAUGUAGCCACAAGCACGUACAAGUAGGGCUUGUAAUUCCACUUGGAUGCGCUCG (((((((((.((((....)))).)((((((.....(((((..(..(((.......)))..))))))........((((((.(.((....)).)))))))..))))))))))))))..... ( -52.60) >DroVir_CAF1 16965 120 + 1 GCAUGAAGCGUCGUGUACGGCAGCGUGGAAAAAUACUGCCAGGUGCCCAAAUUGCGCGAGCGAUAAAUGUAGCUGCAGGCGCGUAUAAGCAAUGCUUGCAUUUCCAGCUCGAUGCGCUCA ((((..(((((((....))))....((((((....((((.((.(((....(((((....)))))....))).))))))(((.((((.....)))).))).)))))))))..))))..... ( -42.70) >DroPse_CAF1 9382 120 + 1 GCAUCGAGGGUGCCGAACGGCAGUGUCGAAAAGUACUGCCAAGUGCCCAGAUUGCGGGUGCGAUAAAUGUAGCCGCAUGCUCGAAGAAGCAAUGCCUGCAGCUCCACCUGAAUCCGUUCG ((((.....))))((((((((((((.(.....)))))))).........((((.((((((.((....(((((..(((((((......))).)))))))))..)))))))))))).))))) ( -44.60) >DroMoj_CAF1 16450 120 + 1 GCAUGAAGCGUUGUGUAAGGCAACGUGGAGAAGUACUGCCAGGUGCCCAAAUUGCGCGAGCGAUAAAUGUAGCUGCAGGCGCGUAUAAGUAAUGCCUGCAUUUCCAGUUCGAUGCGUUCA ((((((((((((((.....)))))))(((((.(((((....)))))....(((((....))))).........(((((((((......))...))))))))))))..))).))))..... ( -41.50) >DroAna_CAF1 16138 120 + 1 GUGUCCAAGGUGCCAAAGGGUAGGGUGGAGAAGUACUGCCAGGUUCCCAGAUUGCGAGUGCGGUAAAUGUAACCGCAAGCUCGGAUAAGCAGAGCCUGCAGUUCCACUUGAAUACGUUCG ((((.((((.((((....))))...((((.....(((((.((((((......(.((((((((((.......)))))..))))).)......))))))))))))))))))).))))..... ( -42.90) >DroPer_CAF1 9425 120 + 1 GCAUCGAGGGUGCCGAACGGCAGCGUCGAAAAGUACUGCCAAGUGCCCAGAUUGCGGGUGCGAUAAAUGUAGCCGCAUGCUCGAAGAAGCAAUGCCUGCAGCUCCACCUGAAUCCGUUCG ...((((.(.((((....)))).).))))...(((((....)))))...((((.((((((.((....(((((..(((((((......))).)))))))))..))))))))))))...... ( -43.40) >consensus GCAUCAAGGGUGCCGAACGGCAGCGUGGAAAAGUACUGCCAGGUGCCCAGAUUGCGGGUGCGAUAAAUGUAGCCGCAAGCUCGUAUAAGCAAUGCCUGCAGUUCCACCUGAAUGCGUUCG ((((..(((.........(((.((((......(((((....)))))....(((((....)))))..)))).)))(((.((.............)).))).......)))..))))..... (-22.65 = -20.90 + -1.74)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:21 2006