Locus 5527

Sequence ID 3R_DroMel_CAF1
Location 14,574,129 – 14,574,227
Length 98
Max. P 0.529340
window9016

overview

Window 6

Location 14,574,129 – 14,574,227
Length 98
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 80.36
Mean single sequence MFE -32.02
Consensus MFE -22.64
Energy contribution -22.50
Covariance contribution -0.14
Combinations/Pair 1.30
Mean z-score -1.16
Structure conservation index 0.71
SVM decision value -0.01
SVM RNA-class probability 0.529340
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14574129 98 + 27905053
UGGCAAACAUUUGCCCAAGAUAGAUAACGCAAUCGAGGCUUCGUUUGAGUUUUCCAUGGUGCGCAGGCGAUCGGUCGACGAGGUGCGUUGGCAUGUGC
.(((((....)))))....(((..(((((((.(((.(((((((((((.((...(....).)).)))))))..))))..)))..)))))))...))).. ( -31.10)
>DroVir_CAF1 8262 94 + 1
UGGUAAAGAUGUUGUCAAGUUGGAAACUGCGAACGAAGCUUCGUUUGAGUUUUCCAUGGUACGCAGGCGUUCGCUCGACGAGGUGCGUUGUAU----C
.((((..(((.(((((.(((((((((((.(((((((....))))))))).)))))).((.(((....)))))))).))))).)).)....)))----) ( -25.60)
>DroPse_CAF1 1444 87 + 1
UGGCAAA------GCCAAGUUGGAGAGCGCAAACGAGGCCUCGUUUGAGUUUUCCAUGGUGCGCAGGCGAUCGCUCGAUGAGGUGCGUUGUC-----U
..((...------((((...((((((((.(((((((....))))))).))))))))))))..))((((((.(((.(......).))))))))-----) ( -35.60)
>DroYak_CAF1 1851 98 + 1
GGACAAACUUUUGCCCAAGAUAGAUAACGCAAGCGAGGCUUCGUUUGAGUUUUCCAUGGUGCGCAGGCGAUCGGUCGACGAGGUGCGUUGGCAUGUGC
..........((((.((..((.((.(((.((((((......)))))).))).)).))..)).))))(((....(((((((.....)))))))...))) ( -27.20)
>DroAna_CAF1 7536 98 + 1
UAGCAAGCAUUUUCCAAAGCUGGAGAAUGCAAACGAGGCCUCGUUUGAGUUUUCCAUGGUACGCAGGCGAUCCCUCGACGAGGUGCGUUGGCAUGUGC
..(((.((((((((((....))))))))))...(((((..(((((((.((...(....).)).)))))))..))))).....((((....)))).))) ( -37.00)
>DroPer_CAF1 1491 87 + 1
UGGCAAA------GCCAAGUUGGAGAGCGCAAACGAGGCCUCGUUUGAGUUUUCCAUGGUGCGCAGGCGAUCGCUCGAUGAGGUGCGUUGUC-----U
..((...------((((...((((((((.(((((((....))))))).))))))))))))..))((((((.(((.(......).))))))))-----) ( -35.60)
>consensus
UGGCAAACAUUU_CCCAAGUUGGAGAACGCAAACGAGGCCUCGUUUGAGUUUUCCAUGGUGCGCAGGCGAUCGCUCGACGAGGUGCGUUGGCA____C
..............(((...((((((((.(((((((....))))))).))))))))))).(((((..((.((....))))...))))).......... (-22.64 = -22.50 +  -0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:20 2006