Locus 5526

Sequence ID 3R_DroMel_CAF1
Location 14,573,843 – 14,573,938
Length 95
Max. P 0.627259
window9015

overview

Window 5

Location 14,573,843 – 14,573,938
Length 95
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 79.48
Mean single sequence MFE -35.43
Consensus MFE -21.96
Energy contribution -21.91
Covariance contribution -0.05
Combinations/Pair 1.41
Mean z-score -1.56
Structure conservation index 0.62
SVM decision value 0.19
SVM RNA-class probability 0.627259
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14573843 95 - 27905053
UCC------UUUGACUCCAGUGGUGGUGAGCACUUGCUCAGGUCGGCCGAGUUACAAGUGUGGAACGAACAAGACGAGCUGCUAUCCUGGGGCUGAAGAUU
..(------(((..((((((.((((((((((....))))((.(((..(..(((....((.....)).)))..).))).))))))))))))))..))))... ( -32.90)
>DroVir_CAF1 7969 95 - 1
GCG---GCUGCUGCCUCCAGAGGCGGCGAGCACUUGCUGAUGUCCGCCGACGUGCAGGUGUGAUAGGAA---GACGAGCUGCUGUCCAGAAGCUGCAAACC
(((---((((((((((....))))))).((((((((((..((((((((........)))).))))...)---).)))).)))).......))))))..... ( -42.70)
>DroSim_CAF1 1535 95 - 1
UCC------UUAGACUCCAGUGGUGGUGAGCACUUGCUCAGAUCAGCCGAGUUACAAGUGUGGAACGAACAUGACGAGCUGCUAUCCUGGGGCUGAAGAUU
((.------((((.((((((.((((((((((....)))))...((((...(((....((((.......)))))))..))))))))))))))))))).)).. ( -31.90)
>DroEre_CAF1 1526 95 - 1
UCU------UUAGCCUCCAGCGGUGGUGAGCACUUGCUCAGGUCGGCCGAGUUACAAGUGUGGAACGAACAAGACGAGCUGCUGUCCUGGGGCUGAAGAUU
(((------((((((.(((((((..((((((....))))..((((..((..((((....))))..))..)..)))..))..)))..))))))))))))).. ( -38.60)
>DroYak_CAF1 1565 95 - 1
UCU------GUAGACUCCAGUGGUGGUGAGCACUUGCUCAGUUCAGCUGAGUUACAAGUGUGGAACGAACAAGACGAGCUGCUGUCCUGGGGCUAAAGAUU
(((------.(((.((((((.((..((..((((((((((((.....)))))...)))))))((..((.......))..))))..))))))))))).))).. ( -33.90)
>DroAna_CAF1 7262 101 - 1
CCUGGUCCAGCGGAUUCCAACGGCGGCGAGCACUUGCUCAGAUCAGCCGAGUUGCAAGUGUGGAACGAGCACGACGAGCUGCUGUCCUGCGGCUACAAAUA
....(((..((...(((((...(((((((((....))))...((....))))))).....)))))...))..))).((((((......))))))....... ( -32.60)
>consensus
UCU______GUAGACUCCAGUGGUGGUGAGCACUUGCUCAGGUCAGCCGAGUUACAAGUGUGGAACGAACAAGACGAGCUGCUGUCCUGGGGCUGAAGAUU
.........((((.((((((.((((((((((....)))).....(((((........((.....))........)).)))))))))))))))))))..... (-21.96 = -21.91 +  -0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:19 2006