| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 14,571,398 – 14,571,518 |
| Length | 120 |
| Max. P | 0.940548 |
| Location | 14,571,398 – 14,571,518 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 76.81 |
| Mean single sequence MFE | -49.05 |
| Consensus MFE | -25.73 |
| Energy contribution | -25.68 |
| Covariance contribution | -0.05 |
| Combinations/Pair | 1.37 |
| Mean z-score | -2.29 |
| Structure conservation index | 0.52 |
| SVM decision value | 1.29 |
| SVM RNA-class probability | 0.940548 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14571398 120 + 27905053 UGCUCCAGGGAAUCCGGUGGCCAGGACACUGGGCGCCUGCUGCAAGCAGCCCAGAAAAUCGCCCUGAGCAGCCGGAGAGAGCUCCUGGCUGAAAAGGCGGCGAAGGUAUGGCAUCAUCUU ((((((.((......((((.((((....)))).)))).((((....))))))......(((((((...(((((((((....)))).)))))....)).))))).))...))))....... ( -52.60) >DroPse_CAF1 64923 114 + 1 GGAUCCCGCAAAGCCAUUGGUUAGCAGGUGCGGUGCCUGUUGCAGGCAGCCCAGAAAAUCCGUUUGUGCGGCAGGACUCAGCUCCUGGCUGAACAAGCGGCGGAGAUAUAACAU------ ..(((((((...(((....((.(((((((.....))))))))).))).............(((((((.((((((((......)))).)))).))))))))))).))).......------ ( -43.10) >DroEre_CAF1 67823 120 + 1 UGCUCCAGGGAAUCCGGUGGACAGGAGACUGGGCGCCUGCUGCAGGCAGCCCAGAAAGUCGCCCUGAGCAGCCGGAGAGAGCUCCUGGCUGAAAAGGCGGCGAAGGUAUAGCAUCUUCUU ..((((.((....))(.....).)))).(((((((((((...))))).))))))...((((((.....(((((((((....)))).)))))....))))))((((((.....)))))).. ( -56.30) >DroYak_CAF1 73595 120 + 1 UGCUCCAGGGAAGCCGGUGGCCAGGAGACUGGGCGCCUGCUGCAGGCAGCCCAGAAAGUCGCCCUGAGCAGCCGGAGAGAGCUCCUGGCUGAAAAGGCGGCGAAGGUAUAACAUCAUCUU ..((((.((....))((...)).)))).(((((((((((...))))).))))))...((((((.....(((((((((....)))).)))))....)))))).(((((........))))) ( -54.80) >DroAna_CAF1 64786 120 + 1 UGCUCCAUUAAAUCCAUUGGCCAACAGGCUAGGCGCCUGCUGCAAGCAGCCGAGGAAAUCGCCGUGCGUGGCCGGAGCCAGCUCCUGGCUAAACCAUCGGCGAAGAUAAAACAUAAUGUU .....(((((..(((.((((((....)))))).((.((((.....)))).)).)))..((((((((..(((((((((....)))).)))))...)).))))))..........))))).. ( -45.90) >DroPer_CAF1 64300 114 + 1 GGAUCCGGCAAAGCCAUUGGUUAGCAGGAGCGGUGCCUGUUGCAGGCAGCCCAGAAAAUCCGUUUGUGCGGCAGGACUCAGCUCCUGGCUGAACAAGCGGCGCAGAUAUAACAU------ ..(((..((...(((.(((.((((((((((((((.(((((((((.(.(((...........)))).))))))))))))..)))))).))))).)))..))))).))).......------ ( -41.60) >consensus UGCUCCAGGAAAGCCAGUGGCCAGCAGACUGGGCGCCUGCUGCAGGCAGCCCAGAAAAUCGCCCUGAGCAGCCGGAGACAGCUCCUGGCUGAAAAAGCGGCGAAGAUAUAACAUCAUCUU ...................(((.........((((((((...))))).))).......(((((((...(((((((((....)))).)))))....)).))))).)))............. (-25.73 = -25.68 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:17 2006