Locus 5523

Sequence ID 3R_DroMel_CAF1
Location 14,565,463 – 14,565,557
Length 94
Max. P 0.684909
window9012

overview

Window 2

Location 14,565,463 – 14,565,557
Length 94
Sequences 4
Columns 101
Reading direction forward
Mean pairwise identity 84.25
Mean single sequence MFE -33.51
Consensus MFE -25.50
Energy contribution -26.31
Covariance contribution 0.81
Combinations/Pair 1.19
Mean z-score -1.65
Structure conservation index 0.76
SVM decision value 0.31
SVM RNA-class probability 0.684909
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14565463 94 + 27905053
-------ACUGCCGAUUCCCUUCUCGGAUCGAUGGAAUCUUUACUGGUGGGGUGGGUUAUGGGUUAUGCACUAUCUCCCACCGUAGUAGUGUGUAGUUUUC
-------(((((.((((((..((.......)).))))))..(((((.((.((((((..((((........))))..)))))).)).))))).))))).... ( -34.40)
>DroSec_CAF1 63115 100 + 1
GCACCCGGCUGCCGAUUUCCCUCUCGGAUCGAUGGAAUCU-CACUGGUGGGGUGGGUUACGGCUUAUGCACUAUCUCCCACCGUAGUAGUGUGUAGUUUUC
......((((((.((((.((.((.......)).)))))).-(((((.((.((((((.....((....)).......)))))).)).))))).))))))... ( -31.90)
>DroSim_CAF1 63952 100 + 1
GCACCCGGCUGCCGAUUCCCCUCUCGGAUCGAUGGAAUCU-CACUGGUGGGGUGGGUUACGGGUUAUGCACUAUCUCCCACCGUAGUAGUGUGUAGUUUUC
..(((((...(((.(((((((....(((((....).))))-....)).))))).)))..)))))((((((((((..(.....)..))))))))))...... ( -33.20)
>DroEre_CAF1 60968 87 + 1
GCACCCGGCUGCCGAUUCCCUUCUCCGAUCGCUGGAAUCU-CACUGGUGGGG-------------GUGCACUAUCUCCCACCGCAGCAGUGUGUAGUUUUC
((((.(.(((((.((((((..............)))))).-....(((((((-------------(........))))))))))))).).))))....... ( -34.54)
>consensus
GCACCCGGCUGCCGAUUCCCCUCUCGGAUCGAUGGAAUCU_CACUGGUGGGGUGGGUUACGGGUUAUGCACUAUCUCCCACCGUAGUAGUGUGUAGUUUUC
......((((((.((((((..............))))))..(((((.((.((((((....((........))....)))))).)).))))).))))))... (-25.50 = -26.31 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:16 2006