| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 14,562,492 – 14,562,597 |
| Length | 105 |
| Max. P | 0.539998 |
| Location | 14,562,492 – 14,562,597 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 78.94 |
| Mean single sequence MFE | -32.38 |
| Consensus MFE | -19.11 |
| Energy contribution | -19.45 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.539998 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14562492 105 - 27905053 ACAAAUCACAGAGCUUUGUAGGGCGCAUCAAGUCCAUGUGCUUAUGGUAUAACAUUACCAAGCAGAACAAGUUGAAGCUCAGUAUUUUAGGAAAAAUUCUGGCAA--------------- ..........(((((((...((((.......)))).(.((((..(((((......))))))))).).......)))))))......((((((....))))))...--------------- ( -26.10) >DroVir_CAF1 67341 115 - 1 ACAAAUCCCAGAGCUUUGUCGGCCGCAUCAAGGCCAUGUGCCUUUGGUACAACAUAACCAAGCAGAACAAGCUCAAACUGAGUAUUCUGGGCAGGAUUUUGGCGCGGUAAGACUU----- .................(((.(((((..(((((((...((((((((((........))))))(((((...((((.....)))).))))))))))).)))))..)))))..)))..----- ( -35.50) >DroGri_CAF1 65747 120 - 1 ACAAAUCCCAGAAAUUUGUGGGUCGCAUCAAGGCCAUGUGCCUGUGGUACAACAUUACCAAGCAGAACAAGCUCAAGCUUAGUAUUCUGGGCCAAAUUCUAGCAAGGUUUGUAGUUACCU (((((((((((((.(((((.((((.......)))).((((((...))))))..........)))))((((((....)))).)).))))))((.........))..)))))))........ ( -31.50) >DroWil_CAF1 122944 105 - 1 ACAAGUCGCAGAGCUUUGUGGGGCGCAUCAAGUCCAUGUGCCUGUGGUACAACAUUACCAAGCAGAACAAACUGAAGUUAAGCAUUUUGGGUAAGAUUCUUGCCA--------------- .((((..((..((((((...((((((((.......)))))))).(((((......))))).............))))))..))..))))((((((...)))))).--------------- ( -30.40) >DroMoj_CAF1 69927 113 - 1 ACAAGUCGCAGAGCUUUGUGGGUCGCAUCAAGGCCAUGUGCCUGUGGUACAACAUUACCAAGCAGAACAAGCUCAAGCUGAGCAUUCUCGGCCGGAUUCUGGCACGGUGAGGA------- .....(((((((((((.(((((((.......)))).((((((...))))))....))).)))).......((((.....))))..)))(((((((...))))).))))))...------- ( -35.60) >DroAna_CAF1 57139 105 - 1 ACAAGUCGCAGAGCUUCGUGGGACGCAUUAAGUCCAUGUGCCUCUGGUACAACAUUACGAAGCAGAACAAGCUCAAGCUCAGUAUUUUGGGCAAGAUUCUGGCCC--------------- ........((((((((((((((((.......)))).((((((...))))))....)))))))).............((((((....)))))).....))))....--------------- ( -35.20) >consensus ACAAAUCGCAGAGCUUUGUGGGGCGCAUCAAGGCCAUGUGCCUGUGGUACAACAUUACCAAGCAGAACAAGCUCAAGCUCAGUAUUCUGGGCAAGAUUCUGGCAA_______________ ..........((((((.((.((((.......)))).(.(((...(((((......))))).))).)))))))))..((.(((.(((((....))))).)))))................. (-19.11 = -19.45 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:15 2006