Locus 5521

Sequence ID 3R_DroMel_CAF1
Location 14,532,031 – 14,532,133
Length 102
Max. P 0.991295
window9009 window9010

overview

Window 9

Location 14,532,031 – 14,532,133
Length 102
Sequences 3
Columns 102
Reading direction forward
Mean pairwise identity 73.15
Mean single sequence MFE -27.57
Consensus MFE -15.37
Energy contribution -15.05
Covariance contribution -0.33
Combinations/Pair 1.17
Mean z-score -2.18
Structure conservation index 0.56
SVM decision value 1.60
SVM RNA-class probability 0.966476
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14532031 102 + 27905053
AUAUACACCUCUUCUAUGUGUGUGUUCCUCUGUGUGUGUGUGUAUUUUUAUGGACAUGGAGAGCUCGUUCGUGAGCUCGACACUUGCUACAUUUCACAGGGU
((((((((.........))))))))..(((((((.((((((.(((....))).)).((..(((((((....)))))))..))......))))..))))))). ( -32.10)
>DroSim_CAF1 30027 91 + 1
AUAUACACCU---CUAUGU--------CUCUCUGUGUGUGUGUAUUUUUAUGGACAUGGAGAGCUCGUUCGUGAGCUCGACACUUGCCACAUUUCACAGGGU
..........---......--------..(((((((.(((((((....)))((.((((..(((((((....)))))))..))..))))))))..))))))). ( -26.30)
>DroYak_CAF1 33853 77 + 1
-----CACUUCAUCUGUGU--------GUG------------CGUUCUUAAGGACAUAGAGAGCUCGUUCGUGAGCUCGUCACUUGCCACAUUUCACAGGGU
-----.......(((((((--------(((------------(((((....))))...(((((((((....))))))).))....).))))...)))))).. ( -24.30)
>consensus
AUAUACACCUC_UCUAUGU________CUCU_UGUGUGUGUGUAUUUUUAUGGACAUGGAGAGCUCGUUCGUGAGCUCGACACUUGCCACAUUUCACAGGGU
......((((..(((((((..................................)))))))(((((((....)))))))....................)))) (-15.37 = -15.05 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 0

Location 14,532,031 – 14,532,133
Length 102
Sequences 3
Columns 102
Reading direction reverse
Mean pairwise identity 73.15
Mean single sequence MFE -22.92
Consensus MFE -15.41
Energy contribution -15.97
Covariance contribution 0.56
Combinations/Pair 1.10
Mean z-score -1.89
Structure conservation index 0.67
SVM decision value 2.26
SVM RNA-class probability 0.991295
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14532031 102 - 27905053
ACCCUGUGAAAUGUAGCAAGUGUCGAGCUCACGAACGAGCUCUCCAUGUCCAUAAAAAUACACACACACACAGAGGAACACACACAUAGAAGAGGUGUAUAU
.(((((((...((((....(((..((((((......))))))..)))...........))))......))))).))...((((.(........))))).... ( -22.96)
>DroSim_CAF1 30027 91 - 1
ACCCUGUGAAAUGUGGCAAGUGUCGAGCUCACGAACGAGCUCUCCAUGUCCAUAAAAAUACACACACACAGAGAG--------ACAUAG---AGGUGUAUAU
((((((((...(((((...(((..((((((......))))))..)))..)))))..........(.....)....--------.)))))---.)))...... ( -24.60)
>DroYak_CAF1 33853 77 - 1
ACCCUGUGAAAUGUGGCAAGUGACGAGCUCACGAACGAGCUCUCUAUGUCCUUAAGAACG------------CAC--------ACACAGAUGAAGUG-----
...(((((...((((..(((.(((((((((......)))))).....)))))).....))------------)).--------.)))))........----- ( -21.20)
>consensus
ACCCUGUGAAAUGUGGCAAGUGUCGAGCUCACGAACGAGCUCUCCAUGUCCAUAAAAAUACACACACACA_AGAG________ACAUAGA_GAGGUGUAUAU
...(((((...(((((...(((..((((((......))))))..)))..)))))............(.....)...........)))))............. (-15.41 = -15.97 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:14 2006