Locus 5520

Sequence ID 3R_DroMel_CAF1
Location 14,531,734 – 14,531,837
Length 103
Max. P 0.644266
window9008

overview

Window 8

Location 14,531,734 – 14,531,837
Length 103
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 81.69
Mean single sequence MFE -43.22
Consensus MFE -30.33
Energy contribution -31.30
Covariance contribution 0.97
Combinations/Pair 1.10
Mean z-score -1.57
Structure conservation index 0.70
SVM decision value 0.23
SVM RNA-class probability 0.644266
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14531734 103 - 27905053
-----------------GUUACUCACCUGUAUCGCUCGGUGUGAUGUUGCUGAGGCGAUGGGUGAGGAAUCCUCGGAGAUUGGAGACGACGCGCUGCGGCGAGUUCGGCCCGCUGCCAAU
-----------------....(((((((..(((((((((((......)))))).))))))))))))(((..((((.((.(((....)))....)).))).)..)))(((.....)))... ( -38.00)
>DroVir_CAF1 30840 107 - 1
-----UUAU--------GUGUCUCACCUGUAUCGCUCGGUGUGAUAUUGCUGAGGCGGUGGGUGAGAAAGCCGCGCAAAUUGGAGACAACGCGCUGCGGCGAAUUUGGCCCGCUGCCAAU
-----....--------.....(((.(.(((((((.....))))))).).)))((((((((((.(((..(((((((...(((....)))...)).)))))...))).))))))))))... ( -49.30)
>DroGri_CAF1 31160 111 - 1
-----GU----GUGUGUGUGGCUCACCUGUAUCGCUCGGUGUGAUAUUGCUGAGGCGGUGGGUGAGAAACCCGCGCAAAUUGGAGACAACACGCUGCGGCGAGUUGGGCCCGCUGCCAAU
-----((----(((((((((((((((((..(((((((((((......)))))).))))))))))))....))))))....((....)))))))).((((((.(.....).)))))).... ( -50.10)
>DroWil_CAF1 88899 107 - 1
-----UAAA--------GGAACUCACCUGUAUCGCUCGGUGUGAUGUUGCUGAGGCGAUGUGUUAGGAAACCGCGCAAAUUGGAGACAACACGCUGCGGCGAGUUGGGACCGCUGCCAAU
-----....--------((......(((...((((((((((((.(((..(..(.(((.((.(((....))))))))...)..)..))).))))))).)))))...))).......))... ( -35.02)
>DroMoj_CAF1 35475 115 - 1
-----GUAUUGGUGUAUCCGACUAACCUGUAUCGCUCGGUGUGAUAUUGCUCAGGCGAUGGCUGAGAAAGCCGCGCAAGUUGGAGACGACACGCUGCGGCGAGUUGGGGCCGCUGCCAAU
-----..((((((((.(((((((.....(((((((.....)))))))..(((((.(...).)))))...(((((((..((((....))))..)).))))).)))))))...)).)))))) ( -46.30)
>DroAna_CAF1 27922 110 - 1
GACAUUA----------AAUGCUCACCUGUGUCGCUCGGUGUGAUAUUGCUCAGGCGAUGGGUGAGGAAGCCGCGCAGAUUGGAGACUACACGCUGCGGCGAGUUGGGCCCGCUCCCAAU
.......----------..(.(((((((..(((((..((.((......))))..)))))))))))).).(((((((.....(....).....)).)))))..((((((......)))))) ( -40.60)
>consensus
_____UU__________GUGACUCACCUGUAUCGCUCGGUGUGAUAUUGCUGAGGCGAUGGGUGAGAAAGCCGCGCAAAUUGGAGACAACACGCUGCGGCGAGUUGGGCCCGCUGCCAAU
.....................(((((((..(((((((((((......)))))).))))))))))))......(((....(((....)))..))).((((((.........)))))).... (-30.33 = -31.30 +   0.97)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:12 2006