Locus 5519

Sequence ID 3R_DroMel_CAF1
Location 14,530,586 – 14,530,697
Length 111
Max. P 0.625116
window9007

overview

Window 7

Location 14,530,586 – 14,530,697
Length 111
Sequences 5
Columns 112
Reading direction forward
Mean pairwise identity 75.14
Mean single sequence MFE -24.19
Consensus MFE -6.10
Energy contribution -7.78
Covariance contribution 1.68
Combinations/Pair 1.09
Mean z-score -1.69
Structure conservation index 0.25
SVM decision value 0.19
SVM RNA-class probability 0.625116
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14530586 111 + 27905053
AUUGUUCGGGCAAUUGCUGAAAUUAACAAAGAAAUUGCC-CAAUUGUUGUCCAGGGAGUUUUGGGUUCUGCAAAAAUAAUUACAAUUUCUGUAGCAAGAAAAUAAACCAAAA
.((((..((((((((.((...........)).)))))))-)(((((((.....((((.(....).)))).....)))))))))))(((((......)))))........... ( -21.80)
>DroSec_CAF1 27642 93 + 1
AUUGUUCGGGCAAUUGCUGAAAUUAACAAAGAAAUUGCC-CAAUUGUUUUCCAGGGAGU--UGGGUUCUGCCAAAAUAACUACAACUGCUGUGGCA----------------
.......((((((((.((...........)).)))))))-).........(((.(((((--((((((.(......).)))).))))).)).)))..---------------- ( -24.30)
>DroSim_CAF1 28586 109 + 1
AUUGUUCGGGCAAUUGCUGAAAUUAACAAAGAAAUUGCC-CAAUUGUUGUCCAGGGAGU--UGGGUUCUGCCAAAAUAAUUACAACUGCUGUAGCAAGAGAAUAAACCAAAA
.((((((((((((((.((...........)).)))))))-)..((((((....((.(((--((...................))))).)).))))))..))))))....... ( -27.01)
>DroEre_CAF1 27327 109 + 1
AUUGUUCGGGCAAUUGCUGGAAUUAACAAAGAAAUUGCC-CAAUUUUGGUGCAGGGAAU--UCUGCUGUGGCAAAAUAAUUACAACUGCUGCAGCAAGAAAGUAAGCAAAAG
.......((((((((.((...........)).)))))))-)........(((...(..(--(((((((..(((.............)))..)))).))))..)..))).... ( -30.32)
>DroAna_CAF1 26905 85 + 1
AUUGUUCGGACAAUUGCUGAAAUUAACAAUGAAAGUGCCGCGAUUGCUGGCCAGGGAAU--UGG-UUGUUGUAAAAUAAUUACUUUUA------------------------
.(((..(((.(((((((.(...((........))...).))))))))))..)))((((.--(((-(((((....)))))))).)))).------------------------ ( -17.50)
>consensus
AUUGUUCGGGCAAUUGCUGAAAUUAACAAAGAAAUUGCC_CAAUUGUUGUCCAGGGAGU__UGGGUUCUGCCAAAAUAAUUACAACUGCUGUAGCAAGA_A_UAA_C_AAA_
.......((((((((.((...........)).))))))).)(((((((...(((((.........)))))....)))))))............................... ( -6.10 =  -7.78 +   1.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:11 2006