Locus 5516

Sequence ID 3R_DroMel_CAF1
Location 14,519,034 – 14,519,135
Length 101
Max. P 0.612278
window9002

overview

Window 2

Location 14,519,034 – 14,519,135
Length 101
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 81.17
Mean single sequence MFE -31.23
Consensus MFE -19.80
Energy contribution -20.22
Covariance contribution 0.42
Combinations/Pair 1.16
Mean z-score -1.69
Structure conservation index 0.63
SVM decision value 0.16
SVM RNA-class probability 0.612278
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14519034 101 - 27905053
CGCGGGACUGGCCUACAUGCAUCUGCUCAAGGAGUGCAUCCCAUGGGCCAGUUACAUCUGGAAGAAGCCCGAGAUGCCACCAACUGUGGCCUGAAAAUAA----A
(((((((((((((((.(((((.((.(....).)))))))....)))))))))).(((((((.......)).))))).......)))))............----. ( -34.70)
>DroGri_CAF1 16128 101 - 1
CAAGGGAUUAGCCUACAUGCAUCUCCUCAAGGAGUGCAUCCCAUGGGCCAGUUACAUCUGGAAGAAACCCGAGAUGCCCCCAACUGUUUACUAAAUUUUG----A
...(((....(((((.(((((.((((....)))))))))....)))))......(((((((.......)).)))))..)))...................----. ( -28.20)
>DroWil_CAF1 51401 99 - 1
CAAUGGCAUGGCCUAUAUGCAUCUACUCAAGGAGUGCAUACCCUGGGCCAGUUAUAUCUGGAAGAAGCCUGAGAUGCCUCCAACAGUGGCCUA--AAUAA----A
....(((.((((((((((((((((......))).))))))...))))))).......(((...((.((.......)).))...)))..)))..--.....----. ( -27.10)
>DroMoj_CAF1 18629 105 - 1
CAAUGGACUAGCCUACAUGCACCUGCUGAAGGAGUGCAUUCCCUGGGCCAGCUACAUCUGGAAGAAGCCCGAGUUUCCACCAACUGUUGCCUAAAUCACGUUCCC
....((((..(((((.((((((((......)).))))))....)))))..((.(((..(((..(((((....)))))..)))..))).)).........)))).. ( -27.90)
>DroAna_CAF1 14972 101 - 1
CUCCGGCCUGGCCUACAUGCACCUCCUGAAGGAGUGCAUCCCCUGGGCCAGCUACGUCUGGAAGAAGCCGGAGAUGCCGCCAACUGUUUACUAAAAAUAA----A
(((((((((((((((.((((((.(((....)))))))))....))))))))(((....))).....)))))))...........................----. ( -37.70)
>DroPer_CAF1 14584 101 - 1
CUCUGGUCUGGCGUACAUGCAUCUGCUCAAGGAGUGCAUUCCCUGGGCCAGCUACAUCUGGAAGAAGCCAGAGAUGCCGCCAACAGUUGCCUAAGAAUAA----A
..(((...(((((.....(((((.(((((.((((....)))).)))))........(((((......))))))))))))))).)))..............----. ( -31.80)
>consensus
CAAUGGACUGGCCUACAUGCAUCUGCUCAAGGAGUGCAUCCCCUGGGCCAGCUACAUCUGGAAGAAGCCCGAGAUGCCACCAACUGUUGCCUAAAAAUAA____A
....((.((((((((.((((((((......)).))))))....))))))))...(((((((......))..)))))...))........................ (-19.80 = -20.22 +   0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:06 2006