| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 14,508,493 – 14,508,612 |
| Length | 119 |
| Max. P | 0.569021 |
| Location | 14,508,493 – 14,508,612 |
|---|---|
| Length | 119 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 78.07 |
| Mean single sequence MFE | -37.10 |
| Consensus MFE | -22.07 |
| Energy contribution | -21.97 |
| Covariance contribution | -0.10 |
| Combinations/Pair | 1.41 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.569021 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14508493 119 + 27905053 CCUCCUUCCA-AACUUAGGUGGCAUCUUCUUUGCCAAUCCCAUGCGCAAGCAGGGUUACAUCACCAUGUUGGAUCCGUUGCAGGAUUCCUUUGGUGAGCGGAUGGGAGGAUUGCUCUUCC (((((((((.-........(((((.......)))))..(((.(((....)))))).....((((((....((((((......))))))...))))))..))).))))))........... ( -47.50) >DroVir_CAF1 4974 116 + 1 A---UUCCCU-CCCUCAGGCGGCAUCUUCUUUGCCAAUCCCAUGCGCAAGCAGGGCUAUAUAACGAUGCUGGAUCCUCUCCAGGAUUCCUUUGGUGAGCGCAUGGGUGGCCUCUUGUUUC .---......-.....((((((((.......))))...(((((((((.((((..(........)..))))(((((((....))))))).........)))))))))..))))........ ( -41.00) >DroGri_CAF1 5814 116 + 1 U---UUUCUA-CUUUUAGGUGGCAUUUUCUUUGCCAAUCCAAUGAGGAAGCAGGGCUAUAUAACCAUGUUGGAUCCGCUGCAGGACUCGUUUGGUGAGCGAAUGGGUGGCUUGUUGUUUC .---......-(((...(((((((.......)))))..))...)))(((((((((((((...((((...((..(((......)))..))..))))..........))))))..))))))) ( -29.72) >DroWil_CAF1 37818 120 + 1 CCUGUCUCUUCUCUUUAGGUGGCAUCUUUUUUGCCAAUCCGAUGCGCAAACAGGGGUAUAUUACCAUGCUGGAUCCAUUGCAGGACUCGUUUGGCGAACGAAUGGGCGGCCUCCUCUUCU .((((((.(((......(((((((.......)))))..))..(((.(((((...((((...)))).....(..(((......)))..)))))))))...))).))))))........... ( -31.90) >DroMoj_CAF1 5360 116 + 1 A---UUUGUU-CCUUCAGGUGGCAUCUUCUUCGCUAAUCCCAUGCGCAAGCAGGGUUAUAUAACCAUGUUGGAUCCGUUGCAGGAUUCGUUUGGUGAGCGAAUGGGCGGCUUGUUGUUUC .---......-....(((((.((.((...((((((...(((.(((....)))))).......((((...(((((((......)))))))..)))).)))))).)))).)))))....... ( -41.00) >DroAna_CAF1 4672 109 + 1 CCU-----------UCAGGUGGCAUUUUCUUUGCCAAUCCAAUGCGAAAACAGGGCUACAUCACUAUGCUGGAUCCUCUGCAGGAUUCGUUUGGUGAGCGAAUGGGAGGUCUUCUCUUCU (((-----------((..(((((......(((((.........)))))......))))).((((((.((.(((((((....))))))))).))))))..))).))((((......)))). ( -31.50) >consensus C___UUUCUU_CCUUCAGGUGGCAUCUUCUUUGCCAAUCCCAUGCGCAAGCAGGGCUAUAUAACCAUGCUGGAUCCGCUGCAGGAUUCGUUUGGUGAGCGAAUGGGAGGCCUGCUCUUCC ................((((.((...(((((((((((...........((((.((........)).))))((((((......))))))..)))))))).)))...)).))))........ (-22.07 = -21.97 + -0.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:00 2006