| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 14,502,917 – 14,503,034 |
| Length | 117 |
| Max. P | 0.648115 |
| Location | 14,502,917 – 14,503,034 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 80.98 |
| Mean single sequence MFE | -41.38 |
| Consensus MFE | -24.07 |
| Energy contribution | -23.41 |
| Covariance contribution | -0.67 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.648115 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14502917 117 + 27905053 GCUGUCUGCAGCUCCUGCAUGCAGUGCUCCAGUGCCUCCACAUGGUCCACCAGCAGGCGCUUUGAGUACAGGAUUUUCUGCAGCAGAUGAUCCUGGAUUACCUGGUUUGUUAUGCAU ((((....))))...((((((((((((((.(((((((.....(((....)))..)))))))..))))))((((((.((((...)))).)))))).............)).)))))). ( -43.50) >DroPse_CAF1 10764 116 + 1 GAGGACUGCAGGUCCUGCAUGCAUUGCUCGAGCGCCUCGACGUGGUCAACGAGCAGGCGCUUCGAGUAGAGUAUCUUUUGCAGCAGGCCAUCCUGUAUUACCUG-UGUGUUACGCAG .(((..((((((.(((((.(((((((((((((((((((..(((.....))).).)))))).)))))))).........)))))))))....))))))...)))(-((.....))).. ( -48.40) >DroEre_CAF1 13344 116 + 1 GACAUCUGCAGCUCCUGCAUGCAGUGCUCCAGUGCCUCCACAUGGUCCACCAGCAGGCGCUUUGAGUACAGGAUUUUCUGCAGCAGGUGAUCCUGUAUUACCUGGUUUGUUAUGCA- ((((.((((((.(((((....).((((((.(((((((.....(((....)))..)))))))..))))))))))....))))))((((((((.....))))))))...)))).....- ( -42.60) >DroYak_CAF1 19919 116 + 1 GAUGCCUGCAACUCCUGCAUGCAGUGCUCCAGUGCCUCCACAUGGUCCACCAGCAGGCGCUUCGAGUACAGGAUCUUCUGCAGCAGGUGAUCCUGGAUUACCUGGUUAGUUAUGCA- ..(((.((((.....)))).)))((((((.(((((((.....(((....)))..)))))))..)))))).(.((...(((.(.(((((((((...))))))))).))))..)).).- ( -42.50) >DroAna_CAF1 13804 117 + 1 GAUUUCGACAGUUCCCGCAUGCAUUGCUCCAACGCCUCCACAUGGUCCACAAGUAGGCGCUUCGAGAAGAGGAUCUUGUGCAGCAGAUGAUCUUGGAUUACCUGUUUUGUAACAAAU ......(((((.(((.((.(((((.(.(((..(((((..((.((.....)).)))))))(((....))).))).)..)))))))((.....)).)))....)))))........... ( -25.50) >DroPer_CAF1 10589 103 + 1 GAGGACUGCAGGUCCUGCAUGCAUUGCUCGAGCGCCUCGACGUGGUCAACGAGCAGGCGCUUCGAGUAGAGUAUCUUUUGCAGCAGGCCAUCCUGUAUUACCU-------------- .(((..((((((.(((((.(((((((((((((((((((..(((.....))).).)))))).)))))))).........)))))))))....))))))...)))-------------- ( -45.80) >consensus GAUGUCUGCAGCUCCUGCAUGCAGUGCUCCAGCGCCUCCACAUGGUCCACCAGCAGGCGCUUCGAGUACAGGAUCUUCUGCAGCAGGUGAUCCUGGAUUACCUGGUUUGUUAUGCA_ ....((.....(.(((((.((((((((((.((((((((..............).)))))))..)))))).........))))))))).).....))..................... (-24.07 = -23.41 + -0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:59 2006