Locus 5510

Sequence ID 3R_DroMel_CAF1
Location 14,486,487 – 14,486,598
Length 111
Max. P 0.825345
window8992

overview

Window 2

Location 14,486,487 – 14,486,598
Length 111
Sequences 6
Columns 111
Reading direction reverse
Mean pairwise identity 79.70
Mean single sequence MFE -53.10
Consensus MFE -38.54
Energy contribution -37.88
Covariance contribution -0.66
Combinations/Pair 1.45
Mean z-score -1.60
Structure conservation index 0.73
SVM decision value 0.70
SVM RNA-class probability 0.825345
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14486487 111 - 27905053
ACUCCAUGGGCGCCUAGUCUGCUCUGCAACUGCUGAGCGGCCGCCUGCUGUUGUUGUGUCGGUGGCGGCGCUUGGGGGAUUCCUUGUGGCGGCGCCUGCUGCUGAGGACCA
.(((((..((((((.....(((((.((....)).)))))((((((.((.........)).)))))))))))))))))...(((((..((((((....)))))))))))... ( -53.40)
>DroPse_CAF1 1067 102 - 1
ACCCCAUGGGCGCCCAGACGACUCUGCAGCUGCUGGGCUGCGGUUUGCUGCUGCUGUGUUGGCGGCGGCACCUGGGGCGCCACUUGCUGGGGCGGCUGC---------ACG
.(((((.((((((((((......((((((((....))))))))..((((((((((.....)))))))))).)).))))))).)....))))).......---------... ( -54.10)
>DroSec_CAF1 1062 111 - 1
ACUCCAUGGGCGCCAAGUCUGCUCUGCAACUGCUGUGCGGCCGCCUGCUGUUGUUGUGUCGGUGGCGGCGCUUGGGGGAUGCCUUGUGGCGGUACCUGCUGCUGAGGACCA
.(((((..((((((.....(((.(.((....)).).)))((((((.((.........)).)))))))))))))))))...(((....)))(((.(((.(....))))))). ( -47.60)
>DroEre_CAF1 1055 111 - 1
ACUCCAUGGGCGCCUAGUCUGCUCUGCAACUGCUGAGCGGCCGCCUGUUGCUGUUGUGUUGGUGGCGGCGCUUGGGGAAUGCCUUGCGGUGGUGCCUGCUGCUGAGGGCCA
.(((((..((((((.....(((((.((....)).)))))((((((...(((....)))..)))))))))))))))))...(((((.(((..((....))..)))))))).. ( -54.10)
>DroYak_CAF1 1048 111 - 1
ACUCCAUGGGCGCCUAGUCUGCUCUGUAACUGCUGAGCGGCCGCCUGUUGCUGCUGUGUUGGUGGCGGUGCUUGGGGAAUACCUUGUGGCGGUGCCUGCUGCUGAGGACCA
.(((((..((((((.....(((((.((....)).)))))((((((...(((....)))..)))))))))))))))))....(((((..((((...))))..).)))).... ( -47.20)
>DroAna_CAF1 1050 111 - 1
ACCCCAUGGGCCCCCAAACGGCUCUGCAACUGUUGGGCGGCAGCCUGUUGCUGCUGCGUUGGCGGUGGUGCCUGGGGCAUCACCUGCGGCGGUGGCUGCUGCUGUUGGCCC
.......((((((((((.(((........))))))))(((((((..((..((((((((....)(((((((((...))))))))).)))))))..)).)))))))..))))) ( -62.20)
>consensus
ACUCCAUGGGCGCCUAGUCUGCUCUGCAACUGCUGAGCGGCCGCCUGCUGCUGCUGUGUUGGUGGCGGCGCUUGGGGAAUCCCUUGCGGCGGUGCCUGCUGCUGAGGACCA
.(((((..((((((......((((.((....)).)))).((((((...(((....)))..))))))))))))))))).........(((((((....)))))))....... (-38.54 = -37.88 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:57 2006