Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,051,522 – 2,051,617 |
Length | 95 |
Max. P | 0.867688 |
Location | 2,051,522 – 2,051,617 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 81.95 |
Mean single sequence MFE | -25.27 |
Consensus MFE | -16.74 |
Energy contribution | -17.13 |
Covariance contribution | 0.39 |
Combinations/Pair | 1.19 |
Mean z-score | -2.68 |
Structure conservation index | 0.66 |
SVM decision value | 0.86 |
SVM RNA-class probability | 0.867688 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2051522 95 + 27905053 CCAUGUCAU--------UCAAUCUACUCGAUUCCAAAUACCGC--AAUGCU---CAUUGCACAUUGCACAUUGAAUUGUGGUCUCAAUUGAAUGUGCGGCAAAUGAGA .........--------........((((.((((.......((--(((...---.))))).....(((((((.(((((......))))).))))))))).)).)))). ( -26.10) >DroSec_CAF1 195026 95 + 1 CCAUGUCAU--------UCAAUCAACUCGAUUCCAAAUACCGC--AAUGCG---CAUUGCACAUUGCACAUUGAAUUGUGGUCUCAAUUGAAUGUGCGGCAAAUGAGA .........--------........((((.((((.......((--(((...---.))))).....(((((((.(((((......))))).))))))))).)).)))). ( -26.10) >DroSim_CAF1 199951 95 + 1 CCCUGUCAU--------UCAAUCAACUCGAUUCCAAAUACCGC--AAUGCG---CAUUGCACAUUGCACAUUGAAUUGUGGUCUCAAUUGAAUGUGCGGCAAAUGAGA .........--------........((((.((((.......((--(((...---.))))).....(((((((.(((((......))))).))))))))).)).)))). ( -26.10) >DroEre_CAF1 194916 88 + 1 CCAUGUCAU--------UCAAUCAACUCGAUUUCAUAUACCGC--AAUGC----------ACACUGCACAUUGAAUUGUUGUCUCAAUUGAAUGUGCCGCAAAUGAGA .....((((--------(.((((.....))))...........--..(((----------.....(((((((.(((((......))))).))))))).)))))))).. ( -17.90) >DroYak_CAF1 198408 95 + 1 CGACGUCAU--------UCAAUCAACUCGAUUUCAUAUACCGC--AAUGCA---CAUUGCACACUGCACAUUGAAUUGUUGUCUCAAUUGAAUGUGCUGCAAAUGAGA .........--------........(((.((((((......((--(((...---.))))).....(((((((.(((((......))))).))))))))).))))))). ( -23.20) >DroAna_CAF1 171171 108 + 1 CUGUCUCAUUCAAUCAUUCAAUCAUCUAGAUCCCAAGCACAAUAAAAUGUGCCAGAGUGCAGAUUGCACAUUUCAUUGUGGACCUGAUUGAAUGUGCGGCAAAUGAGA ...(((((((....((((((((((....(.(((((((((((......)))))....((((.....))))......))).))).))))))))))).......))))))) ( -32.20) >consensus CCAUGUCAU________UCAAUCAACUCGAUUCCAAAUACCGC__AAUGCG___CAUUGCACAUUGCACAUUGAAUUGUGGUCUCAAUUGAAUGUGCGGCAAAUGAGA .........................((((..................(((........)))..(((((((((.(((((......))))).)))))))))....)))). (-16.74 = -17.13 + 0.39)
Location | 2,051,522 – 2,051,617 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 81.95 |
Mean single sequence MFE | -27.82 |
Consensus MFE | -17.17 |
Energy contribution | -17.10 |
Covariance contribution | -0.07 |
Combinations/Pair | 1.21 |
Mean z-score | -2.24 |
Structure conservation index | 0.62 |
SVM decision value | 0.40 |
SVM RNA-class probability | 0.719210 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2051522 95 - 27905053 UCUCAUUUGCCGCACAUUCAAUUGAGACCACAAUUCAAUGUGCAAUGUGCAAUG---AGCAUU--GCGGUAUUUGGAAUCGAGUAGAUUGA--------AUGACAUGG ..(((..(((((((((((.(((((......))))).))))))).....(((((.---...)))--))))))..)))((((.....))))..--------......... ( -26.80) >DroSec_CAF1 195026 95 - 1 UCUCAUUUGCCGCACAUUCAAUUGAGACCACAAUUCAAUGUGCAAUGUGCAAUG---CGCAUU--GCGGUAUUUGGAAUCGAGUUGAUUGA--------AUGACAUGG ((.((..(((((((((((.(((((......))))).)))))))(((((((...)---))))))--..))))..)))).((((.....))))--------......... ( -28.10) >DroSim_CAF1 199951 95 - 1 UCUCAUUUGCCGCACAUUCAAUUGAGACCACAAUUCAAUGUGCAAUGUGCAAUG---CGCAUU--GCGGUAUUUGGAAUCGAGUUGAUUGA--------AUGACAGGG .........((...((((((((..(.((((((......)))(((((((((...)---))))))--))))).((((....)))))..)))))--------)))...)). ( -28.70) >DroEre_CAF1 194916 88 - 1 UCUCAUUUGCGGCACAUUCAAUUGAGACAACAAUUCAAUGUGCAGUGU----------GCAUU--GCGGUAUAUGAAAUCGAGUUGAUUGA--------AUGACAUGG ..((((((...(((((((.(((((......))))).))))))).((((----------((...--...))))))...............))--------))))..... ( -20.00) >DroYak_CAF1 198408 95 - 1 UCUCAUUUGCAGCACAUUCAAUUGAGACAACAAUUCAAUGUGCAGUGUGCAAUG---UGCAUU--GCGGUAUAUGAAAUCGAGUUGAUUGA--------AUGACGUCG ..((((.(((.(((((((.(((((......))))).)))))))....((((((.---...)))--)))))).))))...((((((......--------..))).))) ( -24.60) >DroAna_CAF1 171171 108 - 1 UCUCAUUUGCCGCACAUUCAAUCAGGUCCACAAUGAAAUGUGCAAUCUGCACUCUGGCACAUUUUAUUGUGCUUGGGAUCUAGAUGAUUGAAUGAUUGAAUGAGACAG ((((((((......(((((((((((((((((((((((((((((.............)))))))))))))).....)))))....))))))))))...))))))))... ( -38.72) >consensus UCUCAUUUGCCGCACAUUCAAUUGAGACCACAAUUCAAUGUGCAAUGUGCAAUG___CGCAUU__GCGGUAUUUGGAAUCGAGUUGAUUGA________AUGACAUGG ..(((..(((.(((((((.(((((......))))).)))))))((((((........)))))).....)))..)))((((.....))))................... (-17.17 = -17.10 + -0.07)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:52 2006