| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 14,484,960 – 14,485,054 |
| Length | 94 |
| Max. P | 0.643910 |
| Location | 14,484,960 – 14,485,054 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 78.83 |
| Mean single sequence MFE | -26.97 |
| Consensus MFE | -17.80 |
| Energy contribution | -18.11 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.643910 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14484960 94 - 27905053 -----------UAGUGCUGGUAAGUUCC----CGCAGCCCGCAUACGUUUUGCAGCACUCCAACGCCUGGUGUUGUAAUUUUUC---UUGUCGCAAGGUGAAAACGAUUUAA -----------..((((.(((.......----....))).)))).((((((((((((((.........))))))))).......---(..((....))..))))))...... ( -23.20) >DroVir_CAF1 35245 112 - 1 UUCGUGAGCCAAAGUGUUGGCAAAUGUUGAAACGAUGCCAUCAUAAGUUUUACAACACUCUAACGCCUGGUGUUGUAAUUUUUCAUUUUGUCGCAAGGUGAAAUCGAAAUGA ..(....).....(((.(((((..(((....))).))))).))).....(((((((((((....)...))))))))))..((((((((..((....))..)))).))))... ( -28.10) >DroSec_CAF1 21750 94 - 1 -----------UAGUGCUGGUAAGUUCC----CGCAGCCAGCAUACGUUUUGCAGCACUCCAACGCCUGGUGUUGUAAUUUUUC---UUGUCGCAAGGUGAAAACGAUUUAA -----------..((((((((.......----....)))))))).((((((((((((((.........))))))))).......---(..((....))..))))))...... ( -27.80) >DroEre_CAF1 30909 94 - 1 -----------UAGUGCUGGUAAGUUCC----CGCAGCCCGCAUACGUUUUGCAGCACUUCAACGCUUGGUGUUGUAAUUUUUC---UUGUCGCAAGGUGAAAACGAUUUAA -----------..((((.(((.......----....))).)))).((((((((((((((.........))))))))).......---(..((....))..))))))...... ( -24.00) >DroYak_CAF1 14765 94 - 1 -----------UAGUGCUGGGAAUUUCC----CGCAGCCCGCAUACGUUUUGCAGCACUUCAGCGCCUGGUGUUGUAAUUUUUC---UUGUCGCAAGGUGAAAACGAUUUAA -----------.(((((((((.....))----)((((..((....))..)))))))))).((((((...)))))).((((.((.---(..((....))..).)).))))... ( -26.10) >DroMoj_CAF1 34399 111 - 1 UCAGCACAGUUUAGUGUUGGCAAACACUGAAACGCUGAAACCAUAAGUUUUACAGCACUCUAACGCCUGGUGUUGUAAUUUUUCAU-UUGUCGCAAGGUGAAAUCGAAAUGA (((((....(((((((((....)))))))))..)))))...((((((..(((((((((((....)...))))))))))..)))..(-(..((....))..))......))). ( -32.60) >consensus ___________UAGUGCUGGUAAGUUCC____CGCAGCCAGCAUACGUUUUGCAGCACUCCAACGCCUGGUGUUGUAAUUUUUC___UUGUCGCAAGGUGAAAACGAUUUAA .............((((.(((...............))).)))).....((((((((((.........)))))))))).........(..((....))..)........... (-17.80 = -18.11 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:56 2006