Locus 5508

Sequence ID 3R_DroMel_CAF1
Location 14,482,626 – 14,482,737
Length 111
Max. P 0.925541
window8990

overview

Window 0

Location 14,482,626 – 14,482,737
Length 111
Sequences 6
Columns 114
Reading direction reverse
Mean pairwise identity 77.72
Mean single sequence MFE -34.67
Consensus MFE -23.27
Energy contribution -23.72
Covariance contribution 0.45
Combinations/Pair 1.20
Mean z-score -1.85
Structure conservation index 0.67
SVM decision value 1.17
SVM RNA-class probability 0.925541
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14482626 111 - 27905053
AGCCACACAUAGAACAAUC---UAAAAUCGUCAUCAUGGUCGACAACAGUGUCCAAUGCCCCGUGUGCACAUUGUACCUGCAUGCGGGCAUGAAUCUCUCCGAUCACUUGGAGA
....((((.((((....))---)).....(((((....)).)))....))))...((((((.(((((((.........))))))))))))).....(((((((....))))))) ( -31.70)
>DroVir_CAF1 32349 102 - 1
GGGCG-AGUU--AGC-AGA-----AAAUCGUCAUCAUGGUGGAC---UGUGUGCAGUGCCCCGUGUGCACGCUGUAUCUGCAUGCGGGCAUGAAUCUCUCCGAUCAUUUGGAGA
.((((-(...--...-...-----...))))).(((((..(.((---((....)))).)((((((((((.........)))))))))))))))...(((((((....))))))) ( -37.60)
>DroPse_CAF1 16073 95 - 1
------------AGC-AAC---CAAGGCCGCCAUCAUGGUCGAC---AGCGUGCAGUGCCCCGUGUGCACCUUGUACCUGCAUGCGGGUAUGAAUCUCUCCGACCAUCUGGAGA
------------.((-(..---...(((((......)))))...---....))).((((((.(((((((.........))))))))))))).....((((((......)))))) ( -30.50)
>DroGri_CAF1 27551 107 - 1
GGGUG-AGUA--AGC-AAAUUGUCUCAUCAUCAUCAUGGUGGAC---AGUGUGCAGUGCCCCGUGUGCACCUUGUAUCUGCAUGCGGGCAUGAAUCUCUCGGAUCACUUGGAGA
(((((-(...--.((-(.((((((.((((((....)))))))))---))).))).((((((.(((((((.........)))))))))))))............))))))..... ( -39.70)
>DroWil_CAF1 30821 92 - 1
------------AAAAA-------CCAUCUUCAUCAUGGUGGAC---AGCGUGCAGUGCCCCGUGUGCACUUUGUAUCUGCAUGCGGGCAUGAAUCUGUCCGAUCAUUUGGAGA
------------.....-------...((((((..(((((((((---((.((...((((((.(((((((.........)))))))))))))..)))))))).))))).)))))) ( -37.20)
>DroMoj_CAF1 31528 97 - 1
-------GUU--AGC-AGC----CCAAUCAUCAUCAUGGUGGAC---AGUGUGCAGUGUCCCGUGUGCACCUUGUACCUGCAUGCGGGCAUGAAUCUCUCCGAUCAUCUGGAGA
-------...--...-.((----((..(((((.....)))))..---.((((((((........((((.....)))))))))))))))).......((((((......)))))) ( -31.30)
>consensus
_______GUU__AGC_AAC_____AAAUCGUCAUCAUGGUGGAC___AGUGUGCAGUGCCCCGUGUGCACCUUGUACCUGCAUGCGGGCAUGAAUCUCUCCGAUCAUUUGGAGA
...........................(((((.....))))).............(((.((((((((((.........))))))))))))).....(((((((....))))))) (-23.27 = -23.72 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:55 2006