| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 14,482,496 – 14,482,586 |
| Length | 90 |
| Max. P | 0.596002 |
| Location | 14,482,496 – 14,482,586 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 83.86 |
| Mean single sequence MFE | -35.55 |
| Consensus MFE | -28.60 |
| Energy contribution | -28.35 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.596002 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14482496 90 - 27905053 GACGAUCGUUGGGAACGG---UGGCAACAGCAUGGGCAGCGUUCUCGCUGCCGCCAUGUUGACAGGAGGAUCUGGAGGAGGUG---GAU-CCAGCGG ......(((((((...(.---((....)).)...(((((((....))))))).((((.((..(((......)))...)).)))---).)-)))))). ( -36.00) >DroSec_CAF1 19363 91 - 1 GACGAUCGUUGGGAACGG---UGGCAACAGCAUGGGCAGCGUUCUCGCUGCCGCCAUGCUGACAGGAGGAACUGGAGGAGGUG---GAUACCAGCGG ......((((((....(.---((....)).)...(((((((....))))))).((((.((..(((......)))..))..)))---)...)))))). ( -38.50) >DroSim_CAF1 12236 90 - 1 GACGAUCGUUGGGAACGG---UGGCAACAGCAUGGGCAGCGUUCUCGCUGCCGCCAUGCUGACAGGAGGAACUGGAGGAGGUG---GAU-CCAGCGG ......(((((((..((.---(..(..((((((((((((((....))))))..)))))))).(((......)))..)..).))---..)-)))))). ( -39.40) >DroEre_CAF1 28339 87 - 1 GACGAUCGUUGGAAACGG---UGGCAACAGCAUGGGUAGUGCUCUCGCUGCCGCCAUGCUGACAGGAGGAACUGGA---GGUG---GAA-CCAGCGG ......((((((....((---(((((.((((((.....)))))...).)))))))..(((..(((......)))..---))).---...-)))))). ( -33.80) >DroYak_CAF1 12231 87 - 1 GACGAUCGUUGGAAACGC---UGGCAACAGUAUGGGUAGUGUUCUCGCUGCCGCCAUGUUGACAGGAGGAACUGGA---GGUG---GAU-CCAGCGG ......(((((((...((---((....))))...(((((((....))))))).((((.((..(((......)))))---.)))---).)-)))))). ( -34.90) >DroAna_CAF1 28472 90 - 1 GACGAUCGUUGGAAGUGGAUCUGGGAGCGGC---GGCAGUGCCCUGGCGGCCGCUAUGCUGGCAGGAG---CUGGGGGCGGUGGAGGAU-CAGGUGG ..(.((((((...(((...((((..((((((---(((...((....)).))))))..)))..)))).)---))...)))))).).....-....... ( -30.70) >consensus GACGAUCGUUGGAAACGG___UGGCAACAGCAUGGGCAGCGUUCUCGCUGCCGCCAUGCUGACAGGAGGAACUGGAGGAGGUG___GAU_CCAGCGG ......((((((...............((((((((((((((....)))))))..))))))).(((......)))................)))))). (-28.60 = -28.35 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:54 2006