Locus 5506

Sequence ID	3R_DroMel_CAF1
Location	14,482,332 – 14,482,423
Length	91
Max. P	0.992548

overview

Window 8

Location	14,482,332 – 14,482,423
Length	91
Sequences	5
Columns	91
Reading direction	forward
Mean pairwise identity	96.59
Mean single sequence MFE	-36.63
Consensus MFE	-34.78
Energy contribution	-35.46
Covariance contribution	0.68
Combinations/Pair	1.04
Mean z-score	-1.75
Structure conservation index	0.95
SVM decision value	2.34
SVM RNA-class probability	0.992548
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14482332 91 + 27905053
CUCCGUUGGAGCAGGCCGCCACGAGGGAGGAGGAUAGCGGUGGUGGUGCUGGUGGCAGCACAGGCGCUGUUGCUGCUGAUAUGGUAUUGAC
((((.(((..((.....))..))).)))).....((((((..(..(((((.(((....))).)))))..)..))))))............. ( -38.80)
>DroSec_CAF1 19109 91 + 1
CUCCGUUGGAGCAGGCCGCCACGAGGGAGGAGGAUAGCGGUGGUGGUGCUGGUGGCAGCACAGGCGCUGUUGCUGCUGAUAUGGUAUUGGC
((((.(((..((.....))..))).)))).....((((((..(..(((((.(((....))).)))))..)..))))))............. ( -38.80)
>DroSim_CAF1 12072 91 + 1
CUCCGUUGGAGCAGGCCGCCACGAGGGAGGAGGAUAGCGGUGGUGGUGCUGGUGGCAGCACAGGCGCUGUUGCUGCUGAUAUGGUAUUGGC
((((.(((..((.....))..))).)))).....((((((..(..(((((.(((....))).)))))..)..))))))............. ( -38.80)
>DroEre_CAF1 28175 91 + 1
CUCCGUUGGAGCAGGCUGCCACGAGGGAGGAGGAUAGAGGUGGUGGUGCUGGUGGCAGCACAGGCGCUGUUGCAGCUGAUAUGGUAUUGAC
((((.(((..((.....))..))).)))).....(((..(..(..(((((.(((....))).)))))..)..)..)))............. ( -32.90)
>DroYak_CAF1 12067 91 + 1
CUACGUUGGAGCAGGCCGCCACGAGGGAGGAGGAUAGUGGUGGUGGUGCUGGUGGCGGCACAGGCGCUGUUGCAGCUGAUAUGGUAUUGAC
....((((.(((((((((((((..............)))))))).((((((....)))))).....))))).))))............... ( -33.84)
>consensus
CUCCGUUGGAGCAGGCCGCCACGAGGGAGGAGGAUAGCGGUGGUGGUGCUGGUGGCAGCACAGGCGCUGUUGCUGCUGAUAUGGUAUUGAC
((((.(((..((.....))..))).)))).....((((((..(..(((((.(((....))).)))))..)..))))))............. (-34.78 = -35.46 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:53 2006