Locus 5503

Sequence ID 3R_DroMel_CAF1
Location 14,478,123 – 14,478,234
Length 111
Max. P 0.531628
window8985

overview

Window 5

Location 14,478,123 – 14,478,234
Length 111
Sequences 6
Columns 111
Reading direction forward
Mean pairwise identity 78.56
Mean single sequence MFE -40.94
Consensus MFE -25.17
Energy contribution -23.32
Covariance contribution -1.86
Combinations/Pair 1.48
Mean z-score -1.40
Structure conservation index 0.61
SVM decision value -0.00
SVM RNA-class probability 0.531628
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14478123 111 + 27905053
GCAUUCGAUACAAAGCUGCUAAUUUAGCCGCUGGGGUCGUCAUGGCUAAUGGCGGCAGCGUGGGCUUUUCAUCUAGCUGGUUGGGUGGCUUAAUGUCGUCAUCUACAUCAC
.....(((((..((((..((....(((((((((((((((((((.....))))))))(((....))).....)))))).)))))))..))))..)))))............. ( -38.30)
>DroPse_CAF1 11467 111 + 1
GCAUUCGAUAUAGGGCCGCCAAUUUGGCGGCCGGCGUGGUCAUCGCCAGUGGCGGGAGGGUCAUUUUGUGGUCCAGCUGGCUGGGCGGCUUGAUAUCACCAUCCCCAUCCG
((...........(((((((.....)))))))((((.......))))....))((((.(((.(((..((.((((((....)))))).))..)))...))).))))...... ( -50.20)
>DroEre_CAF1 23999 111 + 1
GCAUUCGAUACAAAGCUGCUAACUUAGCUGCUGGCGUCGUCAUGGCUAAUGGCGGCAGCGUUGGCUUUUCAUCUAGCUGGUUGGGUGGCUUGAUGUCAUCAUCCGCAUCAC
.((((((((....((((((((((...(((((((.(((.((....))..))).))))))))))))).........)))).))))))))...((((((........)))))). ( -36.90)
>DroYak_CAF1 7895 111 + 1
GCAUUCGAUACAACGCUGCUAAUUUAGCUGCUGGCGUCGUCAUGGCUAAUGGCGGCAGCGUCGGCUUUUCAUCUAGCUGGUUGGGUGGCUUAAUGUCAUCAUCCACAUCAC
......(((.((((((((((...(((((((.((((...)))))))))))....))))))..(((((........)))))))))((((((.....))))))......))).. ( -37.40)
>DroAna_CAF1 24130 111 + 1
GCAUCCGAUAAAGCGCUGCUAGCUUAGCAGCCGGAGUAGUCAUGGCCAACGGUGGUAACACGAUCUUUUCAUCCAGCUGGCUAGGUGGCUUAAAAUCACCCUCGCCAUCCU
((.((((.......(((((((...))))))))))))).....((((((.(.(((....)))((.....)).....).))))))((((((..............)))))).. ( -31.35)
>DroPer_CAF1 10199 111 + 1
GCAUUCGAUAUAGGGCCGCCAAUUUGGCGGCCGGCGUGGUCAUCGCCAAUGGCGGGAGGGUCAUUUUGUGGUCCAGCUGGCUGGGCGGCUUGAUAUCACCAUCCGCAUCCG
.((((........(((((((.....)))))))((((.......))))))))((((..(((..(((..((.((((((....)))))).))..)))..).))..))))..... ( -51.50)
>consensus
GCAUUCGAUACAAAGCUGCUAAUUUAGCGGCCGGCGUCGUCAUGGCCAAUGGCGGCAGCGUCAGCUUUUCAUCCAGCUGGCUGGGUGGCUUAAUAUCACCAUCCACAUCAC
......((((..((((((((...(((((.((((..(((.....)))...))))...(((....))).........)))))...))))))))..)))).............. (-25.17 = -23.32 +  -1.86)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:50 2006