Locus 5502

Sequence ID 3R_DroMel_CAF1
Location 14,474,085 – 14,474,196
Length 111
Max. P 0.823047
window8984

overview

Window 4

Location 14,474,085 – 14,474,196
Length 111
Sequences 6
Columns 111
Reading direction forward
Mean pairwise identity 76.22
Mean single sequence MFE -30.07
Consensus MFE -8.93
Energy contribution -9.77
Covariance contribution 0.84
Combinations/Pair 1.36
Mean z-score -2.75
Structure conservation index 0.30
SVM decision value 0.69
SVM RNA-class probability 0.823047
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14474085 111 + 27905053
UAAGAUACCCAAAUGCCAGAUUAAGGUUGGUAAUGUUGACAUUGCCACCAUGAUGAUAGAUUCUGGCAUGUCUGUACCUAUCGAAAAGCAGACGAUCAAGAAUAACACAAA
...(((......(((((((((((.(((.(((((((....)))))))))).)))........))))))))((((((............)))))).))).............. ( -31.70)
>DroPse_CAF1 3832 108 + 1
UAAGAUACCGUCCUGUGAAAUAAAAGUGGAUUCCUUGGAUAUAGCCACCAUAAUGGUGGAAUGCGGAAUGGCGGUGCCAGUCGACACACAGA---UAGAAAAAAAACCCAU
............(((((.........((.(((((..((......))(((.....)))))))).))((.((((...)))).))....))))).---................ ( -22.70)
>DroSec_CAF1 11089 111 + 1
UAAGCUACCCUCAUGUCAGAUCACGGUCGGCAAUAUUGACAUUGCCACCAUGAUGAUAGAUUCUGACAUGUCUGUACCUACAGAAAAGCAGACGAUCAAAAAGGAAACAAA
...(((.....((((((((((((.(((.((((((......))))))))).)))........)))))))))(((((....)))))..))).............(....)... ( -33.60)
>DroSim_CAF1 3888 111 + 1
UAAGCUACCCUCAUGUCAGAUCAAGGUCGGCAAUGUGGACAUUGCCACCAUGAUGAUAGAUUCUGGCAUGUCUGUACCUACAGAAAAGCAGACGAUCAAAAAGGAAACAAA
...(((.....((((((((((((.(((.(((((((....)))))))))).)))........)))))))))(((((....)))))..))).............(....)... ( -36.50)
>DroEre_CAF1 20045 111 + 1
CAAGCUGCCCACAUGCCAGAUCAAGGUGGGCAAUGUUGACAUUGGCACCAUGAUGAUAGACUGCAACAUGUCCGUACCUAUCGAAAAGCAGCCAAUCAAAAAAAAAACUCU
...(((((...........((((.(((.(.(((((....))))).)))).))))(((((..(((.........))).))))).....)))))................... ( -26.10)
>DroYak_CAF1 3897 111 + 1
CAAGCUGCCCACAUGCCAGAUCAAGGUUGGCAAUGUUGACAUUGGCACCAUGAUGAUAGAGUGCGGAAUGUCCGUACCAAUUGAAAAGCAGGCAAUCAAAAACAAAACCAU
.....((((....(((...((((.(((.(.(((((....))))).)))).))))....(.((((((.....))))))).........)))))))................. ( -29.80)
>consensus
UAAGCUACCCACAUGCCAGAUCAAGGUCGGCAAUGUUGACAUUGCCACCAUGAUGAUAGAUUCCGGCAUGUCUGUACCUAUCGAAAAGCAGACGAUCAAAAAAAAAACAAA
...(.(((..(((((((..((((.(((.(.(((((....))))).)))).))))....(....))))))))..))).)................................. ( -8.93 =  -9.77 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:49 2006