Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,048,437 – 2,048,542 |
Length | 105 |
Max. P | 0.959418 |
Location | 2,048,437 – 2,048,542 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 75.27 |
Mean single sequence MFE | -29.30 |
Consensus MFE | -14.22 |
Energy contribution | -15.00 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.21 |
Mean z-score | -2.34 |
Structure conservation index | 0.49 |
SVM decision value | 1.50 |
SVM RNA-class probability | 0.959418 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2048437 105 - 27905053 CGA----------GCUGCACUUUGCUUUUACUUUUGCCUGCG--AAAAUUGUUUUUAGCAAAUUGCGGGCAAAUUAAUGAGCAGUAAAUUAGCCGCAUUAGUACGGCGGCCAC---AUGC ...----------...(((..((((((.....((((((((((--(...((((.....)))).))))))))))).....)))))).......(((((.........)))))...---.))) ( -33.60) >DroVir_CAF1 240604 104 - 1 CUG----------GCU-UUGUUUGCUUUUACUUUUGCCUGC---AAAAUUGUUUUCUGCAAAUUACUCGCAAAUUAAUGAGCAGAAAAUUAACCACAUUAGAGCACUGCCCGCUC--CCU ..(----------((.-.(((((........(((((....)---))))..(((((((((..((((.........))))..)))))))))...........)))))..))).....--... ( -20.80) >DroEre_CAF1 191492 99 - 1 ---------------UGCACUUUGCUUUUACUUUUGCCUGCG--AAAAUUGUU-CCAGCAAAUUGCGGGCAAAUUAAUGAGCAGUAAAUUAGCUGCAUUAGUGCAGCGGCCAC---AUGC ---------------.((...((((((.....((((((((((--(...((((.-...)))).))))))))))).....)))))).......((((((....)))))).))...---.... ( -35.20) >DroWil_CAF1 192114 116 - 1 GUGUGUGUGUUUUUGU-UUUUAUGCUUUUACUUUUGCCAGAGUAAAAAUUGUUUUCUGCAAAUUACAGGCAAAUUAAUGAGCAGUAAAUUAGCCGCAUUAGAGCAGUGGCCAC---AUGC (((((((.((..((((-(((.((((((((((((......)))))))).((((.....))))......(((.((((.((.....)).)))).))))))).)))))))..)))))---)))) ( -32.10) >DroMoj_CAF1 196511 106 - 1 CUG----------GCU-UUGUUUGCUUUUACUUUUGCCAGC---AAAAUUGUUUUGUGCAAAUUACUCGCAAUUUAAUGAGCAGAAAAUUAACCACAUUAGAGCACUGCCUGGCUAAUGU .((----------(((-..((.((((((...((((((((..---.(((((((...(((.....)))..)))))))..)).)))))).............))))))..))..))))).... ( -21.49) >DroAna_CAF1 168409 115 - 1 CAGUAUGUGCUUUGCCUUACUUUGCUUUUACUUUUGCCUGCG--AAAAUUGUUUUGUGCAAAUUGCGGGUAAAUUAAUGAGCAGUAAAUUAGCCGCAUUAGUACAAUGGCCAC---AUGC ..(((((((.......(((((..((((.....((((((((((--(...((((.....)))).))))))))))).....)))))))))....((((...........)))))))---)))) ( -32.60) >consensus CUG__________GCU_UACUUUGCUUUUACUUUUGCCUGCG__AAAAUUGUUUUCUGCAAAUUACGGGCAAAUUAAUGAGCAGUAAAUUAGCCGCAUUAGAGCAGUGGCCAC___AUGC .....................((((((.....((((((((.....((.((((.....)))).)).)))))))).....)))))).......((((...........)))).......... (-14.22 = -15.00 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:50 2006