| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 14,466,818 – 14,466,938 |
| Length | 120 |
| Max. P | 0.839408 |
| Location | 14,466,818 – 14,466,938 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 95.54 |
| Mean single sequence MFE | -36.40 |
| Consensus MFE | -32.89 |
| Energy contribution | -33.33 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.23 |
| Structure conservation index | 0.90 |
| SVM decision value | 0.74 |
| SVM RNA-class probability | 0.839408 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14466818 120 + 27905053 UAGGAAAAUGCUAGUAAAUGGAGCGACAACACCAAAGCCGGAGAUUGCCGCAAAUUUGCAUGGCCUAUAAAGCAGUUGAGUCGCAUGCGAGAUGGCGAUUGCCCAAUAGGCCGCCAAAAA ..((.........((((((...(((.((((.((......)).).))).)))..))))))..(((((((...(((((((.(((........)))..)))))))...))))))).))..... ( -37.00) >DroSim_CAF1 24739 119 + 1 UAGGAAAAUGCUAGUAAAUGGAGCGACAACACCAAAGCCGGAGAUUGCCGCAAAUUUGCAUGGCCUAUAAAGCAGUUGAGUCGCAUGCGAGAUGGCGAUUGCCCAAUAGGCCGCCAA-AA ..((.........((((((...(((.((((.((......)).).))).)))..))))))..(((((((...(((((((.(((........)))..)))))))...))))))).))..-.. ( -37.00) >DroYak_CAF1 26536 116 + 1 UAGGAAAAUGCUAGUAAAUGGAGC---AACAUCAAAGCCGGAGAUUGCCGCCAAUUUGCAUGGCCUAUAAAGCAGUUGAGUCGCAUGCGAGGAGGCGAUUGCCCAAUAGGCCGCCAA-AA ..((.........((((((((.((---((..((.......))..))))..)).))))))..(((((((...(((((((..(((....))).....)))))))...))))))).))..-.. ( -35.20) >consensus UAGGAAAAUGCUAGUAAAUGGAGCGACAACACCAAAGCCGGAGAUUGCCGCAAAUUUGCAUGGCCUAUAAAGCAGUUGAGUCGCAUGCGAGAUGGCGAUUGCCCAAUAGGCCGCCAA_AA ..((.........((((((...(((.((((.((......)).).))).)))..))))))..(((((((...(((((((..(((....))).....)))))))...))))))).))..... (-32.89 = -33.33 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:37 2006