Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 14,464,838 – 14,464,956 |
Length | 118 |
Max. P | 0.774678 |
Location | 14,464,838 – 14,464,956 |
---|---|
Length | 118 |
Sequences | 3 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 83.86 |
Mean single sequence MFE | -17.93 |
Consensus MFE | -15.28 |
Energy contribution | -15.73 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.07 |
Mean z-score | -1.72 |
Structure conservation index | 0.85 |
SVM decision value | 0.54 |
SVM RNA-class probability | 0.774678 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14464838 118 - 27905053 UAUAUCUAUAAAUCCACAGCCAGAUGCUGCACGACAUUUUGUGUGGCAAAUGCAAAAGAAAAAAGACUAAACCAAAAUAAAAAUUUGCUCAGACAAUAAAAAGGCGAAAUUAAGCGAC ..................(((...(((..(((((....)))))..)))...(((((...........................)))))..............)))............. ( -19.23) >DroSim_CAF1 22744 111 - 1 ------UAUAAAUCCACAGCCAGAUGCUGCACGACAUUUUGUGUGGCAAAUGCAUAAAAAAAAAGACCAAACCAAAACAA-AAUAUGCUCAGACAAUAAAAAGGCGAAAUUAAGCGAC ------............(((...(((..(((((....)))))..)))...(((((........................-..)))))..............)))............. ( -19.87) >DroYak_CAF1 24560 97 - 1 ------UAUAAAACCACAGCCAGAUGCUGCACGACAUUUUGUGUGGCUAAUGCAAA------AAGAC--------AACAA-AAUAUACUCAGACAAUAAAAAGGCGAAAUUAAGCGAC ------............(((....((..(((((....)))))..))...((....------....)--------)....-.....................)))............. ( -14.70) >consensus ______UAUAAAUCCACAGCCAGAUGCUGCACGACAUUUUGUGUGGCAAAUGCAAAA_AAAAAAGAC_AAACCAAAACAA_AAUAUGCUCAGACAAUAAAAAGGCGAAAUUAAGCGAC ..................(((....((..(((((....)))))..))....(((((...........................)))))..............)))............. (-15.28 = -15.73 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:29 2006