| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 14,464,050 – 14,464,168 |
| Length | 118 |
| Max. P | 0.559331 |
| Location | 14,464,050 – 14,464,168 |
|---|---|
| Length | 118 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 87.15 |
| Mean single sequence MFE | -32.07 |
| Consensus MFE | -24.63 |
| Energy contribution | -24.63 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.559331 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14464050 118 + 27905053 AUUGAAAAUCAUUUGCAUUCGAAUGGCAAAUGCUUGGCUAUGGUUAAAACAUCUGACAAUCUGCCCAAAGCGGAUGUG--CCGAACAGCAGCUGAAAGGUUAUUUGCCAGUUAGUUGCAU .........(((((((.........))))))).(((((....((((.......)))).((((((.....))))))..)--))))...((((((((..(((.....)))..)))))))).. ( -34.60) >DroSim_CAF1 21967 120 + 1 AUUGAAAAUCAUUUGCAUUCGAAUGGCAAAUGCUUGGCUAUGGCUAAAACAUCUGACAAUCUGCCCAAAGCGGAUGUGCGCCGUACAGCAGCUGAAAGGUUAUUUGCCAGUUAGUUGCAU ...(..((.(((((((.........))))))).))..)((((((....(((((((.(............))))))))..))))))..((((((((..(((.....)))..)))))))).. ( -35.90) >DroYak_CAF1 23837 101 + 1 AUUGAAAAUCAUUUGCAUUCGAAUGG-----------------CUAAAACAUCUGACAAUCUGGGCAAAGCGGAUGUG--CCGAACAGCAGCUGAAAGGUUAUUUGCCAGUUAGUUGCAU .(((((...........))))).(((-----------------(....(((((((.(............)))))))))--)))....((((((((..(((.....)))..)))))))).. ( -25.70) >consensus AUUGAAAAUCAUUUGCAUUCGAAUGGCAAAUGCUUGGCUAUGGCUAAAACAUCUGACAAUCUGCCCAAAGCGGAUGUG__CCGAACAGCAGCUGAAAGGUUAUUUGCCAGUUAGUUGCAU ........(((((((....)))))))......................(((((((.(............))))))))..........((((((((..(((.....)))..)))))))).. (-24.63 = -24.63 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:28 2006