Locus 5488

Sequence ID 3R_DroMel_CAF1
Location 14,461,656 – 14,461,770
Length 114
Max. P 0.719880
window8953

overview

Window 3

Location 14,461,656 – 14,461,770
Length 114
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 88.38
Mean single sequence MFE -39.40
Consensus MFE -29.12
Energy contribution -33.62
Covariance contribution 4.50
Combinations/Pair 1.08
Mean z-score -1.80
Structure conservation index 0.74
SVM decision value 0.40
SVM RNA-class probability 0.719880
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14461656 114 - 27905053
UUGAGCUAUUUGCGGCCAUUGAAAGCGCUGUUGCACGAACACAGCCGGCA---AAACUGAACUCGUUCGUUUUGUGUUGGCAUUGUUUUAGU---UGGCUCUUGGCUCAGAGGUUUGGCC
((((((((...(.(((((...(((((((....)).........(((((((---((((.(((....))))))))))..))))...)))))...---)))))).)))))))).((.....)) ( -36.40)
>DroSec_CAF1 18967 120 - 1
UUGAGCUAUUUGCGGCCAUUGAAAGCGCUGUUGCACGAACACAGCCGGCAACAGAACUGAACUCGUUCGUUUUGUGUUGGCAUUGUUUUAGGUGGUGGCUCUUGGCUCAGAGGUUUGGCC
((((((((...((.(((((..(((((((....)).........(((((((.((((((.(((....))))))))))))))))...)))))..))))).))...)))))))).((.....)) ( -48.00)
>DroSim_CAF1 19606 120 - 1
UUGAGCUAUUUGCGGCCAUUGAAAGCGCUGUUGCACGAACACAGUCGGCAACAAAACUGAACUCGUUCGUUUUGUGUUGGCAUUGUUUUAGGUGGUGGCUCUUGGCUCAGAGGUUUGGCC
((((((((...((.(((((..(((((((....)).........(((((((.((((((.(((....))))))))))))))))...)))))..))))).))...)))))))).((.....)) ( -45.20)
>DroYak_CAF1 21334 105 - 1
UUGAGCUAUUUGCGGCCAUUGAAAGCGCUGCUGCACGAAAACUGCCGGCA----AACUGAACUU----GUUUUGUAGUGGCAUUGUUUUAGG-------UCUUGGCUUAGAGGUUUGGCU
((((((((.....((((....((((((.(((..(((((((.....(((..----..))).....----.)))))).)..))).)))))).))-------)).)))))))).......... ( -28.00)
>consensus
UUGAGCUAUUUGCGGCCAUUGAAAGCGCUGUUGCACGAACACAGCCGGCA___AAACUGAACUCGUUCGUUUUGUGUUGGCAUUGUUUUAGG___UGGCUCUUGGCUCAGAGGUUUGGCC
((((((((...((.((((((.(((((((....)).........(((((((.((((((.(((....))))))))))))))))...))))).)))))).))...)))))))).......... (-29.12 = -33.62 +   4.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:20 2006