Locus 5487

Sequence ID 3R_DroMel_CAF1
Location 14,461,360 – 14,461,457
Length 97
Max. P 0.800862
window8952

overview

Window 2

Location 14,461,360 – 14,461,457
Length 97
Sequences 4
Columns 104
Reading direction forward
Mean pairwise identity 84.46
Mean single sequence MFE -23.28
Consensus MFE -17.23
Energy contribution -17.22
Covariance contribution -0.00
Combinations/Pair 1.19
Mean z-score -1.86
Structure conservation index 0.74
SVM decision value 0.62
SVM RNA-class probability 0.800862
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14461360 97 + 27905053
UACUGUCUCCACAAUCAAUGCAGC-UAGAUUUCAGUUGAAAGUCAGCGAAAAAUUGUCGCGAGCUCCACCUUAAAAAUUGGAGACAGAAAUCUGA------ACU
..(((((((((.........((((-(.(....))))))..(((..((((.......))))..))).............)))))))))........------... ( -25.80)
>DroSec_CAF1 18673 98 + 1
UACUGUCUCCACAAUCAAUGCCGCUUAGCAUUCAGCUGAAAGUCAGCGAAAAAUUGUCGCGAGCUCCACCUUAAAAAUUGGGGACAGAAAUCUGA------ACU
..(((((((((.............(((((.....))))).(((..((((.......))))..))).............)))))))))........------... ( -25.60)
>DroSim_CAF1 19308 98 + 1
UACUGUCUUCACAAUCAAUGCCGCUUAGCAUUCAGCUGAAAGUCAGCGAAAAAUUGUCUCGAGCUCCACCUUAAAAAUUGGGGACAGAAAUCUGA------ACU
..(((((((((((((.(((((......)))))..((((.....)))).....)))))...(((......))).......))))))))........------... ( -21.30)
>DroYak_CAF1 21037 97 + 1
UACUGUCUCCACAAUCGCAGCUCC-------CAAGCCGAAAGUCACCGUAAUAUUGUCGCGAGCUCCACCUUAAAAAUUGGGGACAGAAAUCCGAACUCGAACU
..(((((((((...((((.(((..-------..)))(....)................))))................))))))))).....((....)).... ( -20.41)
>consensus
UACUGUCUCCACAAUCAAUGCCGC_UAGCAUUCAGCUGAAAGUCAGCGAAAAAUUGUCGCGAGCUCCACCUUAAAAAUUGGGGACAGAAAUCUGA______ACU
..(((((((((.......................((((.....)))).............(((......)))......)))))))))................. (-17.23 = -17.22 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:19 2006