| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 14,459,791 – 14,459,987 |
| Length | 196 |
| Max. P | 0.629099 |
| Location | 14,459,791 – 14,459,907 |
|---|---|
| Length | 116 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 90.88 |
| Mean single sequence MFE | -36.77 |
| Consensus MFE | -26.19 |
| Energy contribution | -25.75 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.11 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.629099 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14459791 116 + 27905053 CGGCAUAGGUACAUCUCUUUUGGGCCUGUUGCCUUUGUAGGCUUUGUCUUUUCUAUGGAUGAUUAGAGC----CAGGUAAUAGGACUUCAUUUGGUACCUUAUACUGCCGAAGUUCGUUU (((((.((((((..(((....)))((((((((((.....(((((((((...((....)).)).))))))----)))))))))))..........)))))).....))))).......... ( -39.00) >DroSec_CAF1 17130 114 + 1 CGACGUAGGCACAUCUCUUUUGGGCCUGUUGCCUUCGUAGGCUUUGUCUUUUCUGUGGAUGAUUAGAGC----CAGGUAAUAGGACUUCAUUUGGU--CUUGUACCGCCGAAGUUCGUUU .(((((((((.((.......)).)))))....(((((..(((((((((...((....)).)).))))))----).((((.(((((((......)))--))))))))..)))))..)))). ( -36.20) >DroSim_CAF1 17773 114 + 1 CGGCGUAGGCACAUCUCUUUUGGGCCUGUUGCCUUCGUAGGCUUUGUCUUUUCUGUGGAUGAUUAGAGC----CAGGUAAUAGGACUUCAUUUGGU--CUUGUACCGCCGAAGUUCGUUU (((((.(((((((.(((....)))..)).))))).)...(((((((((...((....)).)).))))))----).((((.(((((((......)))--)))))))))))).......... ( -38.80) >DroYak_CAF1 19680 118 + 1 CGGCGUAGGCACAUCUAUUGUGGGCCUGUUGGCUUCGUAGGUUUUGUCUUUUCUGUGGAUGAUUAGAGCCAGCCAGGUAAUACGACUUUAUUUGGU--CUUGUACUGCUGAAGCUCGUUU .(((((((((.(((.....))).)))))..((((((((((((((((((...((....)).)).))))))).(((((((((.......)))))))))--.......))).)))))))))). ( -33.10) >consensus CGGCGUAGGCACAUCUCUUUUGGGCCUGUUGCCUUCGUAGGCUUUGUCUUUUCUGUGGAUGAUUAGAGC____CAGGUAAUAGGACUUCAUUUGGU__CUUGUACCGCCGAAGUUCGUUU (((((...(((.(((......((.((((((((((......((((((((...((....)).)).)))))).....)))))))))).))......)))....)))..))))).......... (-26.19 = -25.75 + -0.44)
| Location | 14,459,867 – 14,459,987 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 92.44 |
| Mean single sequence MFE | -23.58 |
| Consensus MFE | -21.46 |
| Energy contribution | -21.40 |
| Covariance contribution | -0.06 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.91 |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.620336 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14459867 120 - 27905053 AUAAAUAAUAACAAUACCAUUUAGAGGCGGAUAACCGAUAAAGCCGUAAGCCGCAAAACAGUUUAAUUUAUGUGCAGCCGAAACGAACUUCGGCAGUAUAAGGUACCAAAUGAAGUCCUA ..............((((........((((.....((.......))....))))................(((((.((((((......)))))).))))).))))............... ( -24.30) >DroSec_CAF1 17206 118 - 1 AUAAAUAAUAACAAUACCAUUUAGAGGCGGAUAACCGAUAAACCCGAAAGCCGCAAAACAGUUUAAUUUAUGUGCAGCCGAAACGAACUUCGGCGGUACAAG--ACCAAAUGAAGUCCUA .................(((((.(..((((.....((.......))....))))................(((((.((((((......)))))).)))))..--.).)))))........ ( -24.80) >DroSim_CAF1 17849 118 - 1 AUAAAUAAUAACAAUACCAUUUAGAGGCGGAUAACCGAUAAAGCCGAAAGCCGCAAAACAGUUUAAUUUAUGUGCAGCCGAAACGAACUUCGGCGGUACAAG--ACCAAAUGAAGUCCUA .................(((((.(..((((.....((.......))....))))................(((((.((((((......)))))).)))))..--.).)))))........ ( -24.80) >DroYak_CAF1 19760 115 - 1 AUAAAUAAUA---AUACCGUUUAGAGGCGGAUAGUCGAUAAAACCGAAAGCCGCAAAACAGUUUAAUUUAUGUGCAGUCGAAACGAGCUUCAGCAGUACAAG--ACCAAAUAAAGUCGUA ..........---.....((((....((((....(((.......)))...)))).))))...........(((((.((.(((......))).)).))))).(--((........)))... ( -20.40) >consensus AUAAAUAAUAACAAUACCAUUUAGAGGCGGAUAACCGAUAAAGCCGAAAGCCGCAAAACAGUUUAAUUUAUGUGCAGCCGAAACGAACUUCGGCAGUACAAG__ACCAAAUGAAGUCCUA .................(((((.(..((((.....((.......))....))))................(((((.((((((......)))))).))))).....).)))))........ (-21.46 = -21.40 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:16 2006