Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 14,459,158 – 14,459,310 |
Length | 152 |
Max. P | 0.797535 |
Location | 14,459,158 – 14,459,278 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.42 |
Mean single sequence MFE | -38.84 |
Consensus MFE | -34.95 |
Energy contribution | -35.45 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -1.72 |
Structure conservation index | 0.90 |
SVM decision value | 0.61 |
SVM RNA-class probability | 0.797535 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14459158 120 + 27905053 UAAUGCCCUGCGUCAGGGUAUAAAGAGUAGCCAUAAAAAGAUUUAAUUUUUUCGGUGUUUUUUGGACAACAACGGCGGAUGGGAGUGCGUCGUCAUGGGGCACACCCCUUUGCCACGUCA ..((((((((...))))))))...((((.((((.(((((.((..((....))..)).)))))))).).))...((((((.(((.((((.((.....)).)))).))).))))))...)). ( -39.30) >DroSec_CAF1 16509 119 + 1 CAAUGCCCUGCUUCAGGGUAUAAAGAGUAGCCAUAAAAAGAUUUAAUU-UUUCGGUGUUUUUUGGACACCAACGGCGGAUGGGAGUGCGUCGUCAUGGGGCACACCCCUUUGCCACGUCA ..((((((((...))))))))..................(((......-....((((((.....))))))...((((((.(((.((((.((.....)).)))).))).))))))..))). ( -42.00) >DroSim_CAF1 17124 119 + 1 CAAUGCCCUGCGUCAGGGUAUAAAGAGUAGCCAUAAAAAGAUUUAAUU-UUUCGGUGUUUUUUGGACACCAACGGCGGAUGGGAGUGCGUCGUCAUGGGGCACACCCCUUUGCCACGUCA ..((((((((...))))))))..................(((......-....((((((.....))))))...((((((.(((.((((.((.....)).)))).))).))))))..))). ( -42.00) >DroYak_CAF1 19038 117 + 1 UAUUGCCCUGCGUCAGAGUA--AAAAAUAGCCAUAAAAAGAUUUAAUU-UUUCUGUGUUUUUUGGGGACCAACGGCGGAUGGGAGUGCGUCGUCAUGGGGCACACCCCUUUGCCACGUCA .....(((.(((.(((((..--..........................-.)))))))).....)))(((....((((((.(((.((((.((.....)).)))).))).))))))..))). ( -32.05) >consensus CAAUGCCCUGCGUCAGGGUAUAAAGAGUAGCCAUAAAAAGAUUUAAUU_UUUCGGUGUUUUUUGGACACCAACGGCGGAUGGGAGUGCGUCGUCAUGGGGCACACCCCUUUGCCACGUCA ..((((((((...)))))))).........(((.(((((.((..((....))..)).))))))))........((((((.(((.((((.((.....)).)))).))).))))))...... (-34.95 = -35.45 + 0.50)
Location | 14,459,198 – 14,459,310 |
---|---|
Length | 112 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 87.45 |
Mean single sequence MFE | -40.35 |
Consensus MFE | -31.20 |
Energy contribution | -31.57 |
Covariance contribution | 0.37 |
Combinations/Pair | 1.07 |
Mean z-score | -1.54 |
Structure conservation index | 0.77 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.623405 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14459198 112 + 27905053 AUUUAAUUUUUUCGGUGUUUUUUGGACAACAACGGCGGAUGGGAGUGCGUCGUCAUGGGGCACACCCCUUUGCCACGUCAGGCGUUGUGGCUAGCUGGUUGUC--------UGUCUGUCC .......................((((((((((((((((.(((.((((.((.....)).)))).))).)))((((((........))))))..))).))))).--------))))).... ( -36.30) >DroSec_CAF1 16549 119 + 1 AUUUAAUU-UUUCGGUGUUUUUUGGACACCAACGGCGGAUGGGAGUGCGUCGUCAUGGGGCACACCCCUUUGCCACGUCAGGCGUUGUGGCUAGCUGGUUGUCUGUCUGUCUGACUGUCC ........-....((((((.....))))))...((((((.(((.((((.((.....)).)))).))).))))))..((((((((....(((..((.....))..)))))))))))..... ( -44.60) >DroSim_CAF1 17164 116 + 1 AUUUAAUU-UUUCGGUGUUUUUUGGACACCAACGGCGGAUGGGAGUGCGUCGUCAUGGGGCACACCCCUUUGCCACGUCAGGCGUUGUGGCUAGCUGG---UCUGUCUGUCUGCCUGUCC ........-....((((((.....))))))...((((((.(((.((((.((.....)).)))).))).))))))..(.((((((....(((..((...---...))..))))))))).). ( -43.20) >DroYak_CAF1 19076 103 + 1 AUUUAAUU-UUUCUGUGUUUUUUGGGGACCAACGGCGGAUGGGAGUGCGUCGUCAUGGGGCACACCCCUUUGCCACGUCAGGCGUUGUGGCUAGUUGGUUGUC----------------U ........-..............((.(((((((((((((.(((.((((.((.....)).)))).))).))))))......(((......))).))))))).))----------------. ( -37.30) >consensus AUUUAAUU_UUUCGGUGUUUUUUGGACACCAACGGCGGAUGGGAGUGCGUCGUCAUGGGGCACACCCCUUUGCCACGUCAGGCGUUGUGGCUAGCUGGUUGUC________UG_CUGUCC .............((((((.....))))))..(((((((.(((.((((.((.....)).)))).))).)))((((((........))))))..))))....................... (-31.20 = -31.57 + 0.37)
Location | 14,459,198 – 14,459,310 |
---|---|
Length | 112 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 87.45 |
Mean single sequence MFE | -31.62 |
Consensus MFE | -24.81 |
Energy contribution | -26.12 |
Covariance contribution | 1.31 |
Combinations/Pair | 1.04 |
Mean z-score | -1.82 |
Structure conservation index | 0.78 |
SVM decision value | 0.61 |
SVM RNA-class probability | 0.797405 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14459198 112 - 27905053 GGACAGACA--------GACAACCAGCUAGCCACAACGCCUGACGUGGCAAAGGGGUGUGCCCCAUGACGACGCACUCCCAUCCGCCGUUGUUGUCCAAAAAACACCGAAAAAAUUAAAU (((((....--------.(((((..((..(((((..........)))))...(((((((((........).))))).)))....)).))))))))))....................... ( -31.20) >DroSec_CAF1 16549 119 - 1 GGACAGUCAGACAGACAGACAACCAGCUAGCCACAACGCCUGACGUGGCAAAGGGGUGUGCCCCAUGACGACGCACUCCCAUCCGCCGUUGGUGUCCAAAAAACACCGAAA-AAUUAAAU ((((.(((.....))).....((((((..(((((..........)))))...(((((((((........).))))).))).......))))))))))..............-........ ( -36.20) >DroSim_CAF1 17164 116 - 1 GGACAGGCAGACAGACAGA---CCAGCUAGCCACAACGCCUGACGUGGCAAAGGGGUGUGCCCCAUGACGACGCACUCCCAUCCGCCGUUGGUGUCCAAAAAACACCGAAA-AAUUAAAU ((((.(.....)......(---(((((..(((((..........)))))...(((((((((........).))))).))).......))))))))))..............-........ ( -32.60) >DroYak_CAF1 19076 103 - 1 A----------------GACAACCAACUAGCCACAACGCCUGACGUGGCAAAGGGGUGUGCCCCAUGACGACGCACUCCCAUCCGCCGUUGGUCCCCAAAAAACACAGAAA-AAUUAAAU .----------------....((((((..(((((..........)))))...(((((((((........).))))).))).......))))))..................-........ ( -26.50) >consensus GGACAG_CA________GACAACCAGCUAGCCACAACGCCUGACGUGGCAAAGGGGUGUGCCCCAUGACGACGCACUCCCAUCCGCCGUUGGUGUCCAAAAAACACCGAAA_AAUUAAAU (((((.................(((((..(((((..........)))))...(((((((((........).))))).))).......))))))))))....................... (-24.81 = -26.12 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:14 2006