Locus 5482

Sequence ID 3R_DroMel_CAF1
Location 14,456,698 – 14,456,817
Length 119
Max. P 0.805551
window8943

overview

Window 3

Location 14,456,698 – 14,456,817
Length 119
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 93.86
Mean single sequence MFE -28.55
Consensus MFE -22.52
Energy contribution -24.03
Covariance contribution 1.50
Combinations/Pair 1.00
Mean z-score -2.47
Structure conservation index 0.79
SVM decision value 0.63
SVM RNA-class probability 0.805551
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14456698 119 + 27905053
UCGAGGGGGAAAAACAUUAAAGUCUAUGUACUACAAUUAGCGGCGAUGCCAAUCAUUGGCCU-UAAUGUCAAGAUACAAACUUAAUUUGCUUGAUGGUACAUAAACCACUCCCUAAUCCA
...((((((....((......)).(((((((((((...((((((...))).(((.(((((..-....)))))))).............))))).))))))))).....))))))...... ( -28.40)
>DroSec_CAF1 14116 114 + 1
UCA-GGGGGAAAAACAUUAAAGUCU----ACUACAAUUAGCGGCGAUGCCAAUCAUUGGCCU-UAAUGUCAAGAUACAAGCUCAAUUUGCUUGAUGGUACAUAAACCACUCCCUAAUCCA
..(-(((((....(((((((.(((.----.(((....))).)))...((((.....)))).)-)))))).......(((((.......))))).((((......))))))))))...... ( -28.50)
>DroSim_CAF1 14690 120 + 1
UCAAGGGGGAAAAACAUUAAAGUCUAUGUACUACAAUUAGCGGCGAUGCCAAUCAUUGGCCUUUAAUGUCAAGAUACAAACUCAAUUUGCUUGAUGGUACAUAAACCACUCCCUAAUCCA
...((((((....((......)).((((((((...(((((.(((((((.....)))).))).)))))((((((...((((.....)))))))))))))))))).....))))))...... ( -28.00)
>DroYak_CAF1 16142 119 + 1
UCGAGGGGAAAAAACAUUAAAGUCUAUGUACUACAAUUAGCGGCGAUGCCAAUCUUUGGCCU-CAAUGUCAAGAUAAAAACUUGAUUUGCUUGAUGGUACAUAAACCACUCCCUAAUCCA
....(((((....((......)).(((((((((((...(((((.((.((((.....)))).)-)...((((((.......))))))))))))).)))))))))......)))))...... ( -29.30)
>consensus
UCAAGGGGGAAAAACAUUAAAGUCUAUGUACUACAAUUAGCGGCGAUGCCAAUCAUUGGCCU_UAAUGUCAAGAUACAAACUCAAUUUGCUUGAUGGUACAUAAACCACUCCCUAAUCCA
...((((((....((......)).(((((((((((...((((((...))).(((.(((((.......)))))))).............))))).))))))))).....))))))...... (-22.52 = -24.03 +   1.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:10 2006