| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 14,453,941 – 14,454,283 |
| Length | 342 |
| Max. P | 0.999901 |
| Location | 14,453,941 – 14,454,055 |
|---|---|
| Length | 114 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 95.27 |
| Mean single sequence MFE | -28.92 |
| Consensus MFE | -27.94 |
| Energy contribution | -27.78 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.97 |
| SVM decision value | 2.50 |
| SVM RNA-class probability | 0.994723 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14453941 114 + 27905053 UUCCCAUCUCUGAUCGCCAGUAAGCC------GCUAUUGCUACUUCAUUUUAUUUGCCAUCCAAUCAACGCGUUGCCAUCUGUGCAACGUCGUUUAUUUGUUGGCCCGGCCGAAAGAAAA ........(((..((((((((((...------....)))))..............((((.(.(((.(((((((((((....).)))))).)))).))).).))))..)).))).)))... ( -29.30) >DroSec_CAF1 11195 114 + 1 UUGCCAUCUCUGAUCGCCAGUAAGCC------GCUAUUGCUACUUCAUUUUAUUUGCCAUCCAAUCAACGCGUUGCCAUCUGUGCAACGUCGUUUAUUUGUUGGCCCGGCCGAAAGAAAA ........(((..((((((((((...------....)))))..............((((.(.(((.(((((((((((....).)))))).)))).))).).))))..)).))).)))... ( -29.30) >DroSim_CAF1 11737 114 + 1 UUGCCAUCUCUGAUCGCCAGUAAGCC------GCUAUUGCUACUUCAUUUUAUUUGCCAUCCAAUCAACGCGUUGCCAUCUGUGCAACGUCGUUUAUUUGUUGGCCCGGCCGAAAGAAAA ........(((..((((((((((...------....)))))..............((((.(.(((.(((((((((((....).)))))).)))).))).).))))..)).))).)))... ( -29.30) >DroEre_CAF1 10873 120 + 1 UUGCCAUCUCUGAUCGCCAGUAAGCCAUUGCUACUAUUGCUACUUCAUUUUAUUUGCCAUCCAAUCAACGCGUUGCCAUCUGUGCAACGUCGUUUAUUUGUUGGCCCGGCCGAAAGAAAA ........(((..(((((((((.((....))))))....................((((.(.(((.(((((((((((....).)))))).)))).))).).))))..)).))).)))... ( -30.10) >DroYak_CAF1 12326 114 + 1 UUACCAUCUCUAAUCGCCAGUAAGGC------GCAAUUGCUACUUCAUUUUAUUUGCCAUCCAAUCAACGCGUUGCCAUCUGUGCAACGUUGUUUAUUUGUUGGCCCGGCCGACAGAAAA ........(((..(((((.(.(((..------((....))..)))).........((((.(.(((.(((((((((((....).)))))).)))).))).).))))..)).))).)))... ( -26.60) >consensus UUGCCAUCUCUGAUCGCCAGUAAGCC______GCUAUUGCUACUUCAUUUUAUUUGCCAUCCAAUCAACGCGUUGCCAUCUGUGCAACGUCGUUUAUUUGUUGGCCCGGCCGAAAGAAAA ........(((..((((((((((.............)))))..............((((.(.(((.(((((((((((....).)))))).)))).))).).))))..)).))).)))... (-27.94 = -27.78 + -0.16)
| Location | 14,453,941 – 14,454,055 |
|---|---|
| Length | 114 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 95.27 |
| Mean single sequence MFE | -35.92 |
| Consensus MFE | -30.58 |
| Energy contribution | -30.62 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.42 |
| Structure conservation index | 0.85 |
| SVM decision value | 2.62 |
| SVM RNA-class probability | 0.995854 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14453941 114 - 27905053 UUUUCUUUCGGCCGGGCCAACAAAUAAACGACGUUGCACAGAUGGCAACGCGUUGAUUGGAUGGCAAAUAAAAUGAAGUAGCAAUAGC------GGCUUACUGGCGAUCAGAGAUGGGAA .(((((.(((.((((((((.(((...((((.((((((.(....)))))))))))..)))..))))..........((((.((....))------.)))).)))))))..)))))...... ( -37.10) >DroSec_CAF1 11195 114 - 1 UUUUCUUUCGGCCGGGCCAACAAAUAAACGACGUUGCACAGAUGGCAACGCGUUGAUUGGAUGGCAAAUAAAAUGAAGUAGCAAUAGC------GGCUUACUGGCGAUCAGAGAUGGCAA .(((((.(((.((((((((.(((...((((.((((((.(....)))))))))))..)))..))))..........((((.((....))------.)))).)))))))..)))))...... ( -37.10) >DroSim_CAF1 11737 114 - 1 UUUUCUUUCGGCCGGGCCAACAAAUAAACGACGUUGCACAGAUGGCAACGCGUUGAUUGGAUGGCAAAUAAAAUGAAGUAGCAAUAGC------GGCUUACUGGCGAUCAGAGAUGGCAA .(((((.(((.((((((((.(((...((((.((((((.(....)))))))))))..)))..))))..........((((.((....))------.)))).)))))))..)))))...... ( -37.10) >DroEre_CAF1 10873 120 - 1 UUUUCUUUCGGCCGGGCCAACAAAUAAACGACGUUGCACAGAUGGCAACGCGUUGAUUGGAUGGCAAAUAAAAUGAAGUAGCAAUAGUAGCAAUGGCUUACUGGCGAUCAGAGAUGGCAA .(((((.(((.((((((((.(((...((((.((((((.(....)))))))))))..)))..))))..........((((.((.......))....)))).)))))))..)))))...... ( -35.00) >DroYak_CAF1 12326 114 - 1 UUUUCUGUCGGCCGGGCCAACAAAUAAACAACGUUGCACAGAUGGCAACGCGUUGAUUGGAUGGCAAAUAAAAUGAAGUAGCAAUUGC------GCCUUACUGGCGAUUAGAGAUGGUAA .(((((((((.((((((((.(((...(((..((((((.(....))))))).)))..)))..))))..........(((..((....))------..))).))))))).))))))...... ( -33.30) >consensus UUUUCUUUCGGCCGGGCCAACAAAUAAACGACGUUGCACAGAUGGCAACGCGUUGAUUGGAUGGCAAAUAAAAUGAAGUAGCAAUAGC______GGCUUACUGGCGAUCAGAGAUGGCAA .(((((.(((.((((((((.(((...((((.((((((.(....)))))))))))..)))..))))...............((....))............)))))))..)))))...... (-30.58 = -30.62 + 0.04)
| Location | 14,453,975 – 14,454,095 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 98.33 |
| Mean single sequence MFE | -29.03 |
| Consensus MFE | -28.22 |
| Energy contribution | -28.10 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.97 |
| SVM decision value | 2.88 |
| SVM RNA-class probability | 0.997540 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14453975 120 + 27905053 UACUUCAUUUUAUUUGCCAUCCAAUCAACGCGUUGCCAUCUGUGCAACGUCGUUUAUUUGUUGGCCCGGCCGAAAGAAAAUGCCUUGCAAUAUCUGCAUUUUCACAUCGCUCAUUUCGCG ...............((((.(.(((.(((((((((((....).)))))).)))).))).).))))..(..(((..((((((((............))))))))...)))..)........ ( -29.70) >DroSec_CAF1 11229 120 + 1 UACUUCAUUUUAUUUGCCAUCCAAUCAACGCGUUGCCAUCUGUGCAACGUCGUUUAUUUGUUGGCCCGGCCGAAAGAAAAUGCCUUGCAAUAUCUGCAUUUUCACAUCGCUCAUUUCGCG ...............((((.(.(((.(((((((((((....).)))))).)))).))).).))))..(..(((..((((((((............))))))))...)))..)........ ( -29.70) >DroSim_CAF1 11771 120 + 1 UACUUCAUUUUAUUUGCCAUCCAAUCAACGCGUUGCCAUCUGUGCAACGUCGUUUAUUUGUUGGCCCGGCCGAAAGAAAAUGCCUUGCAAUAUCUGCAUUUUCACAUCGCUCAUUUCGCG ...............((((.(.(((.(((((((((((....).)))))).)))).))).).))))..(..(((..((((((((............))))))))...)))..)........ ( -29.70) >DroEre_CAF1 10913 120 + 1 UACUUCAUUUUAUUUGCCAUCCAAUCAACGCGUUGCCAUCUGUGCAACGUCGUUUAUUUGUUGGCCCGGCCGAAAGAAAAUGCCUUGCAAUAUCUACAUUUUCACAUCGCUCAUUUCGCG ...............((((.(.(((.(((((((((((....).)))))).)))).))).).))))..(..(((..(((((((..............)))))))...)))..)........ ( -26.44) >DroYak_CAF1 12360 120 + 1 UACUUCAUUUUAUUUGCCAUCCAAUCAACGCGUUGCCAUCUGUGCAACGUUGUUUAUUUGUUGGCCCGGCCGACAGAAAAUGCCUUGCAAUAUCUGCAUUUUCGCAUCGCUUAUUUCGCG ..............(((.....(((.(((((((((((....).)))))).)))).)))(((((((...)))))))((((((((............))))))))))).(((.......))) ( -29.60) >consensus UACUUCAUUUUAUUUGCCAUCCAAUCAACGCGUUGCCAUCUGUGCAACGUCGUUUAUUUGUUGGCCCGGCCGAAAGAAAAUGCCUUGCAAUAUCUGCAUUUUCACAUCGCUCAUUUCGCG ...............((((.(.(((.(((((((((((....).)))))).)))).))).).))))..((.(((..((((((((............))))))))...))).))........ (-28.22 = -28.10 + -0.12)
| Location | 14,453,975 – 14,454,095 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 98.33 |
| Mean single sequence MFE | -32.54 |
| Consensus MFE | -31.68 |
| Energy contribution | -31.72 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.97 |
| SVM decision value | 2.18 |
| SVM RNA-class probability | 0.989802 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14453975 120 - 27905053 CGCGAAAUGAGCGAUGUGAAAAUGCAGAUAUUGCAAGGCAUUUUCUUUCGGCCGGGCCAACAAAUAAACGACGUUGCACAGAUGGCAACGCGUUGAUUGGAUGGCAAAUAAAAUGAAGUA .((........(((...((((((((............))))))))..)))((((..((((......((((.((((((.(....)))))))))))..)))).))))............)). ( -33.50) >DroSec_CAF1 11229 120 - 1 CGCGAAAUGAGCGAUGUGAAAAUGCAGAUAUUGCAAGGCAUUUUCUUUCGGCCGGGCCAACAAAUAAACGACGUUGCACAGAUGGCAACGCGUUGAUUGGAUGGCAAAUAAAAUGAAGUA .((........(((...((((((((............))))))))..)))((((..((((......((((.((((((.(....)))))))))))..)))).))))............)). ( -33.50) >DroSim_CAF1 11771 120 - 1 CGCGAAAUGAGCGAUGUGAAAAUGCAGAUAUUGCAAGGCAUUUUCUUUCGGCCGGGCCAACAAAUAAACGACGUUGCACAGAUGGCAACGCGUUGAUUGGAUGGCAAAUAAAAUGAAGUA .((........(((...((((((((............))))))))..)))((((..((((......((((.((((((.(....)))))))))))..)))).))))............)). ( -33.50) >DroEre_CAF1 10913 120 - 1 CGCGAAAUGAGCGAUGUGAAAAUGUAGAUAUUGCAAGGCAUUUUCUUUCGGCCGGGCCAACAAAUAAACGACGUUGCACAGAUGGCAACGCGUUGAUUGGAUGGCAAAUAAAAUGAAGUA .((........(((...((((((((............))))))))..)))((((..((((......((((.((((((.(....)))))))))))..)))).))))............)). ( -31.80) >DroYak_CAF1 12360 120 - 1 CGCGAAAUAAGCGAUGCGAAAAUGCAGAUAUUGCAAGGCAUUUUCUGUCGGCCGGGCCAACAAAUAAACAACGUUGCACAGAUGGCAACGCGUUGAUUGGAUGGCAAAUAAAAUGAAGUA .((.(..(((.((((((((((((((............))))))))(((.(((...))).)))..........(((((.(....)))))))))))).)))..).))............... ( -30.40) >consensus CGCGAAAUGAGCGAUGUGAAAAUGCAGAUAUUGCAAGGCAUUUUCUUUCGGCCGGGCCAACAAAUAAACGACGUUGCACAGAUGGCAACGCGUUGAUUGGAUGGCAAAUAAAAUGAAGUA .((........(((...((((((((............))))))))..)))((((..((((......((((.((((((.(....)))))))))))..)))).))))............)). (-31.68 = -31.72 + 0.04)
| Location | 14,454,055 – 14,454,168 |
|---|---|
| Length | 113 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 88.95 |
| Mean single sequence MFE | -29.09 |
| Consensus MFE | -20.66 |
| Energy contribution | -20.82 |
| Covariance contribution | 0.16 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.38 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.820808 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14454055 113 + 27905053 UGCCUUGCAAUAUCUGCAUUUUCACAUCGCUCAUUUCGCGGCGGUGGUAUCUUUUGCUUUGUUUGUUUGUUUAAUUAACUUUAGGCCGUGGCUAUAAAAAUUUGGCCACAAGC------- .((((.((((.....(((......(((((((........)))))))........))).....))))..(((.....)))...)))).(((((((........)))))))....------- ( -29.54) >DroSec_CAF1 11309 106 + 1 UGCCUUGCAAUAUCUGCAUUUUCACAUCGCUCAUUUCGCGGCGUUGG---CUUUUGUUUUG----UUUGUUUAAUUAACUUUAGGCCGUGGCUAUAAAAAUUUGGCCACAAGC------- .(((.((((.....))))..........((.......)))))...((---(((..(((..(----((.....))).)))...)))))(((((((........)))))))....------- ( -28.00) >DroSim_CAF1 11851 106 + 1 UGCCUUGCAAUAUCUGCAUUUUCACAUCGCUCAUUUCGCGGCGAUGG---CUUUUGUUUUG----UUUGUUUAAUUAACUUUAGGCCGUGGCUAUAAAAAUUUGGCCACAAGC------- .((((.((((.....(((......(((((((........))))))).---....)))....----.))))............)))).(((((((........)))))))....------- ( -29.02) >DroEre_CAF1 10993 102 + 1 UGCCUUGCAAUAUCUACAUUUUCACAUCGCUCAUUUCGCGG---UGG---CUUUCGCUUUG----UUUGUUUAAUUAACUUUAGGCCG-GGCCAUGAAAAUUUGGCCGCAAGC------- ...(((((................((((((.......))))---)).---.....((((..----...(((.....)))...))))..-(((((........)))))))))).------- ( -26.50) >DroYak_CAF1 12440 110 + 1 UGCCUUGCAAUAUCUGCAUUUUCGCAUCGCUUAUUUCGCGG---UGG---CUUUCGCUUUG----UUUGUUUAAUUAACUUUAGACCGUGGCCAUAAAAAUUUGGCCACAAGCUGGUUGC .....((((.....))))......((((((.......))))---))(---(..((((((..----...((((((......)))))).(((((((........))))))))))).))..)) ( -32.40) >consensus UGCCUUGCAAUAUCUGCAUUUUCACAUCGCUCAUUUCGCGGCG_UGG___CUUUUGCUUUG____UUUGUUUAAUUAACUUUAGGCCGUGGCUAUAAAAAUUUGGCCACAAGC_______ .(((.((((.....))))..........((.......))))).............((((.........((((((......)))))).(((((((........)))))))))))....... (-20.66 = -20.82 + 0.16)
| Location | 14,454,055 – 14,454,168 |
|---|---|
| Length | 113 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 88.95 |
| Mean single sequence MFE | -24.60 |
| Consensus MFE | -18.78 |
| Energy contribution | -18.66 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.659930 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14454055 113 - 27905053 -------GCUUGUGGCCAAAUUUUUAUAGCCACGGCCUAAAGUUAAUUAAACAAACAAACAAAGCAAAAGAUACCACCGCCGCGAAAUGAGCGAUGUGAAAAUGCAGAUAUUGCAAGGCA -------...((((((............))))))((((...(((.....)))...........((((.............(((.......))).(((......)))....)))).)))). ( -21.80) >DroSec_CAF1 11309 106 - 1 -------GCUUGUGGCCAAAUUUUUAUAGCCACGGCCUAAAGUUAAUUAAACAAA----CAAAACAAAAG---CCAACGCCGCGAAAUGAGCGAUGUGAAAAUGCAGAUAUUGCAAGGCA -------(((.(((((............))))))))...................----..........(---((.(((.(((.......))).))).....(((((...))))).))). ( -22.80) >DroSim_CAF1 11851 106 - 1 -------GCUUGUGGCCAAAUUUUUAUAGCCACGGCCUAAAGUUAAUUAAACAAA----CAAAACAAAAG---CCAUCGCCGCGAAAUGAGCGAUGUGAAAAUGCAGAUAUUGCAAGGCA -------(((.(((((............))))))))...................----..........(---((.(((((((.......)))..))))...(((((...))))).))). ( -23.90) >DroEre_CAF1 10993 102 - 1 -------GCUUGCGGCCAAAUUUUCAUGGCC-CGGCCUAAAGUUAAUUAAACAAA----CAAAGCGAAAG---CCA---CCGCGAAAUGAGCGAUGUGAAAAUGUAGAUAUUGCAAGGCA -------(((((((((((........)))))-.((......(((.....)))...----....((....)---)..---)))).......(((((((..........))))))).)))). ( -25.30) >DroYak_CAF1 12440 110 - 1 GCAACCAGCUUGUGGCCAAAUUUUUAUGGCCACGGUCUAAAGUUAAUUAAACAAA----CAAAGCGAAAG---CCA---CCGCGAAAUAAGCGAUGCGAAAAUGCAGAUAUUGCAAGGCA ((((...(((((((((((........)))))))(((.....(((.....)))...----....((....)---).)---)).......))))..(((......)))....))))...... ( -29.20) >consensus _______GCUUGUGGCCAAAUUUUUAUAGCCACGGCCUAAAGUUAAUUAAACAAA____CAAAGCAAAAG___CCA_CGCCGCGAAAUGAGCGAUGUGAAAAUGCAGAUAUUGCAAGGCA ..........((((((............))))))((((..........................................(((.......))).........(((((...))))))))). (-18.78 = -18.66 + -0.12)
| Location | 14,454,095 – 14,454,203 |
|---|---|
| Length | 108 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 85.78 |
| Mean single sequence MFE | -29.30 |
| Consensus MFE | -23.10 |
| Energy contribution | -22.66 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.555382 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14454095 108 + 27905053 GCGGUGGUAUCUUUUGCUUUGUUUGUUUGUUUAAUUAACUUUAGGCCGUGGCUAUAAAAAUUUGGCCACAAGC------------UAGUUAAAAAUAUUGGAGCCGGGCUCAACCGGGAU .(((((((((.(((.(((..((((....((((((......)))))).(((((((........)))))))))))------------.))).))).))))).((((...)))).)))).... ( -28.70) >DroSec_CAF1 11349 101 + 1 GCGUUGG---CUUUUGUUUUG----UUUGUUUAAUUAACUUUAGGCCGUGGCUAUAAAAAUUUGGCCACAAGC------------UAGUUAAAAAUAUUGGAGCCGGGCUCAACCGGGAU ((...((---(((..(((..(----((.....))).)))...)))))(((((((........)))))))..))------------..................((((......))))... ( -28.40) >DroSim_CAF1 11891 101 + 1 GCGAUGG---CUUUUGUUUUG----UUUGUUUAAUUAACUUUAGGCCGUGGCUAUAAAAAUUUGGCCACAAGC------------UAGCUAAAAAUAUUGGAGCCGGGCUCAACCGGGAU ((...((---(((..(((..(----((.....))).)))...)))))(((((((........)))))))..))------------..................((((......))))... ( -28.40) >DroEre_CAF1 11033 93 + 1 G---UGG---CUUUCGCUUUG----UUUGUUUAAUUAACUUUAGGCCG-GGCCAUGAAAAUUUGGCCGCAAGC----------------UAAAAAUAUUGCAGCCGGGCUCAACCGGGAU .---(((---(((..((....----...((((((......))))))..-(((((........)))))))))))----------------))............((((......))))... ( -26.10) >DroYak_CAF1 12480 110 + 1 G---UGG---CUUUCGCUUUG----UUUGUUUAAUUAACUUUAGACCGUGGCCAUAAAAAUUUGGCCACAAGCUGGUUGCUGGGCUAGUUAAAAAUAUUGGAGCCGGGCUCAACCGGGAU .---.((---(....)))...----...((((((......)))))).(((((((........)))))))...(((((((((.((((...((....))....)))).)))..))))))... ( -34.90) >consensus GCG_UGG___CUUUUGCUUUG____UUUGUUUAAUUAACUUUAGGCCGUGGCUAUAAAAAUUUGGCCACAAGC____________UAGUUAAAAAUAUUGGAGCCGGGCUCAACCGGGAU ...............((((.........((((((......)))))).(((((((........)))))))))))..............................((((......))))... (-23.10 = -22.66 + -0.44)
| Location | 14,454,135 – 14,454,243 |
|---|---|
| Length | 108 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 91.76 |
| Mean single sequence MFE | -39.16 |
| Consensus MFE | -33.46 |
| Energy contribution | -33.62 |
| Covariance contribution | 0.16 |
| Combinations/Pair | 1.04 |
| Mean z-score | -3.24 |
| Structure conservation index | 0.85 |
| SVM decision value | 3.96 |
| SVM RNA-class probability | 0.999730 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14454135 108 + 27905053 UUAGGCCGUGGCUAUAAAAAUUUGGCCACAAGC------------UAGUUAAAAAUAUUGGAGCCGGGCUCAACCGGGAUUUGAACCCGGGACCUCUCGCACCCAAAGCGAGAAUCAUAC ...(((((((((((........)))))))...(------------((((.......))))).....))))...(((((.......)))))((..((((((.......)))))).)).... ( -37.20) >DroSec_CAF1 11382 108 + 1 UUAGGCCGUGGCUAUAAAAAUUUGGCCACAAGC------------UAGUUAAAAAUAUUGGAGCCGGGCUCAACCGGGAUUUGAACCCGGGACCUCUCGCACCCAAAGCGAGAAUCAUAC ...(((((((((((........)))))))...(------------((((.......))))).....))))...(((((.......)))))((..((((((.......)))))).)).... ( -37.20) >DroSim_CAF1 11924 108 + 1 UUAGGCCGUGGCUAUAAAAAUUUGGCCACAAGC------------UAGCUAAAAAUAUUGGAGCCGGGCUCAACCGGGAUUUGAACCCGGGACCUCUCGCACCCAAAGCGAGAAUCAUAC ...(((((((((((........)))))))..((------------(..((((.....)))))))..))))...(((((.......)))))((..((((((.......)))))).)).... ( -37.80) >DroEre_CAF1 11063 103 + 1 UUAGGCCG-GGCCAUGAAAAUUUGGCCGCAAGC----------------UAAAAAUAUUGCAGCCGGGCUCAACCGGGAUUUGAACCCGGGACCUCUCGCACCCAAAGCGAGAAUCAUAC ..((.(((-(((((........)))))((((..----------------........))))...))).))...(((((.......)))))((..((((((.......)))))).)).... ( -37.50) >DroYak_CAF1 12510 120 + 1 UUAGACCGUGGCCAUAAAAAUUUGGCCACAAGCUGGUUGCUGGGCUAGUUAAAAAUAUUGGAGCCGGGCUCAACCGGGAUUUGAACCCGGGACCUCUCGCACCCAAAGCGAGAAUCAUAC .......(((((((........))))))).....(((((((.((((...((....))....)))).)))....(((((.......)))))))))((((((.......))))))....... ( -46.10) >consensus UUAGGCCGUGGCUAUAAAAAUUUGGCCACAAGC____________UAGUUAAAAAUAUUGGAGCCGGGCUCAACCGGGAUUUGAACCCGGGACCUCUCGCACCCAAAGCGAGAAUCAUAC ...(((((((((((........))))))).............................((....))))))...(((((.......)))))((..((((((.......)))))).)).... (-33.46 = -33.62 + 0.16)
| Location | 14,454,135 – 14,454,243 |
|---|---|
| Length | 108 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 91.76 |
| Mean single sequence MFE | -41.14 |
| Consensus MFE | -36.70 |
| Energy contribution | -36.94 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.04 |
| Mean z-score | -3.02 |
| Structure conservation index | 0.89 |
| SVM decision value | 4.45 |
| SVM RNA-class probability | 0.999901 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14454135 108 - 27905053 GUAUGAUUCUCGCUUUGGGUGCGAGAGGUCCCGGGUUCAAAUCCCGGUUGAGCCCGGCUCCAAUAUUUUUAACUA------------GCUUGUGGCCAAAUUUUUAUAGCCACGGCCUAA .......((((((.......))))))((..((((((((((.......))))))))))..))............((------------(.(((((((............))))))).))). ( -39.40) >DroSec_CAF1 11382 108 - 1 GUAUGAUUCUCGCUUUGGGUGCGAGAGGUCCCGGGUUCAAAUCCCGGUUGAGCCCGGCUCCAAUAUUUUUAACUA------------GCUUGUGGCCAAAUUUUUAUAGCCACGGCCUAA .......((((((.......))))))((..((((((((((.......))))))))))..))............((------------(.(((((((............))))))).))). ( -39.40) >DroSim_CAF1 11924 108 - 1 GUAUGAUUCUCGCUUUGGGUGCGAGAGGUCCCGGGUUCAAAUCCCGGUUGAGCCCGGCUCCAAUAUUUUUAGCUA------------GCUUGUGGCCAAAUUUUUAUAGCCACGGCCUAA .......((((((.......))))))((..((((((((((.......))))))))))..))............((------------(.(((((((............))))))).))). ( -39.40) >DroEre_CAF1 11063 103 - 1 GUAUGAUUCUCGCUUUGGGUGCGAGAGGUCCCGGGUUCAAAUCCCGGUUGAGCCCGGCUGCAAUAUUUUUA----------------GCUUGCGGCCAAAUUUUCAUGGCC-CGGCCUAA .......((((((.......))))))((((((((((((((.......))))))))))..((((........----------------..))))(((((........)))))-.))))... ( -39.80) >DroYak_CAF1 12510 120 - 1 GUAUGAUUCUCGCUUUGGGUGCGAGAGGUCCCGGGUUCAAAUCCCGGUUGAGCCCGGCUCCAAUAUUUUUAACUAGCCCAGCAACCAGCUUGUGGCCAAAUUUUUAUGGCCACGGUCUAA .......((((((.......))))))((..((((((((((.......))))))))))..))............(((.(((((.....))).(((((((........))))))))).))). ( -47.70) >consensus GUAUGAUUCUCGCUUUGGGUGCGAGAGGUCCCGGGUUCAAAUCCCGGUUGAGCCCGGCUCCAAUAUUUUUAACUA____________GCUUGUGGCCAAAUUUUUAUAGCCACGGCCUAA .......((((((.......))))))((..((((((((((.......))))))))))..))..........................(((.(((((............)))))))).... (-36.70 = -36.94 + 0.24)
| Location | 14,454,168 – 14,454,283 |
|---|---|
| Length | 115 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 93.76 |
| Mean single sequence MFE | -38.27 |
| Consensus MFE | -32.78 |
| Energy contribution | -33.10 |
| Covariance contribution | 0.32 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.23 |
| Structure conservation index | 0.86 |
| SVM decision value | 2.56 |
| SVM RNA-class probability | 0.995279 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14454168 115 + 27905053 -----UAGUUAAAAAUAUUGGAGCCGGGCUCAACCGGGAUUUGAACCCGGGACCUCUCGCACCCAAAGCGAGAAUCAUACCCCUAGACCAUUGAGCCGCAUACCGAGCACCUCGGCACUG -----..............((.((((((((((((((((.......)))))((..((((((.......)))))).))..............)))))))((.......))....)))).)). ( -39.10) >DroSec_CAF1 11415 115 + 1 -----UAGUUAAAAAUAUUGGAGCCGGGCUCAACCGGGAUUUGAACCCGGGACCUCUCGCACCCAAAGCGAGAAUCAUACCCCUAGACCAUUGAGCCGCAUACCGAGCACCUCGGCACUG -----..............((.((((((((((((((((.......)))))((..((((((.......)))))).))..............)))))))((.......))....)))).)). ( -39.10) >DroSim_CAF1 11957 115 + 1 -----UAGCUAAAAAUAUUGGAGCCGGGCUCAACCGGGAUUUGAACCCGGGACCUCUCGCACCCAAAGCGAGAAUCAUACCCCUAGACCAUUGAGCCGCAUACCGAGCACCUCAGCACUG -----..(((.......((((.((..((((((((((((.......)))))((..((((((.......)))))).))..............)))))))))...)))).......))).... ( -36.54) >DroEre_CAF1 11095 111 + 1 ---------UAAAAAUAUUGCAGCCGGGCUCAACCGGGAUUUGAACCCGGGACCUCUCGCACCCAAAGCGAGAAUCAUACCCCUAGACCAUUGAGCCACAUGCCGAGCAUCUGGCCACUG ---------.............((((((((((((((((.......)))))((..((((((.......)))))).))..............)))))))..((((...)))).))))..... ( -35.80) >DroYak_CAF1 12550 120 + 1 UGGGCUAGUUAAAAAUAUUGGAGCCGGGCUCAACCGGGAUUUGAACCCGGGACCUCUCGCACCCAAAGCGAGAAUCAUACCCCUAGACCAUUGAGCCGCAUGCCGAGCAUCUGGGCACUG ..((((...((....))....)))).((((((((((((.......)))))((..((((((.......)))))).))..............)))))))...((((.((...)).))))... ( -40.80) >consensus _____UAGUUAAAAAUAUUGGAGCCGGGCUCAACCGGGAUUUGAACCCGGGACCUCUCGCACCCAAAGCGAGAAUCAUACCCCUAGACCAUUGAGCCGCAUACCGAGCACCUCGGCACUG .......(((.......((((.....((((((((((((.......)))))((..((((((.......)))))).))..............))))))).....)))).......))).... (-32.78 = -33.10 + 0.32)
| Location | 14,454,168 – 14,454,283 |
|---|---|
| Length | 115 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 93.76 |
| Mean single sequence MFE | -45.06 |
| Consensus MFE | -40.08 |
| Energy contribution | -40.48 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.89 |
| SVM decision value | 2.28 |
| SVM RNA-class probability | 0.991612 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14454168 115 - 27905053 CAGUGCCGAGGUGCUCGGUAUGCGGCUCAAUGGUCUAGGGGUAUGAUUCUCGCUUUGGGUGCGAGAGGUCCCGGGUUCAAAUCCCGGUUGAGCCCGGCUCCAAUAUUUUUAACUA----- ..((((((((...))))))))..((((....))))(((((((((...((((((.......))))))((..((((((((((.......))))))))))..)).)))))))))....----- ( -44.90) >DroSec_CAF1 11415 115 - 1 CAGUGCCGAGGUGCUCGGUAUGCGGCUCAAUGGUCUAGGGGUAUGAUUCUCGCUUUGGGUGCGAGAGGUCCCGGGUUCAAAUCCCGGUUGAGCCCGGCUCCAAUAUUUUUAACUA----- ..((((((((...))))))))..((((....))))(((((((((...((((((.......))))))((..((((((((((.......))))))))))..)).)))))))))....----- ( -44.90) >DroSim_CAF1 11957 115 - 1 CAGUGCUGAGGUGCUCGGUAUGCGGCUCAAUGGUCUAGGGGUAUGAUUCUCGCUUUGGGUGCGAGAGGUCCCGGGUUCAAAUCCCGGUUGAGCCCGGCUCCAAUAUUUUUAGCUA----- ......((((.(((.......))).)))).(((.((((((((((...((((((.......))))))((..((((((((((.......))))))))))..)).)))))))))))))----- ( -46.10) >DroEre_CAF1 11095 111 - 1 CAGUGGCCAGAUGCUCGGCAUGUGGCUCAAUGGUCUAGGGGUAUGAUUCUCGCUUUGGGUGCGAGAGGUCCCGGGUUCAAAUCCCGGUUGAGCCCGGCUGCAAUAUUUUUA--------- ..(..(((..((((...))))(.((((((((.......(((.....(((((((.......)))))))..)))(((.......))).))))))))))))..)..........--------- ( -44.00) >DroYak_CAF1 12550 120 - 1 CAGUGCCCAGAUGCUCGGCAUGCGGCUCAAUGGUCUAGGGGUAUGAUUCUCGCUUUGGGUGCGAGAGGUCCCGGGUUCAAAUCCCGGUUGAGCCCGGCUCCAAUAUUUUUAACUAGCCCA ..(((((.((...)).)))))(.((((....(((.(((((((((...((((((.......))))))((..((((((((((.......))))))))))..)).))))))))))))))))). ( -45.40) >consensus CAGUGCCGAGGUGCUCGGUAUGCGGCUCAAUGGUCUAGGGGUAUGAUUCUCGCUUUGGGUGCGAGAGGUCCCGGGUUCAAAUCCCGGUUGAGCCCGGCUCCAAUAUUUUUAACUA_____ ..((((((((...))))))))..((((....))))(((((((((...((((((.......))))))((..((((((((((.......))))))))))..)).)))))))))......... (-40.08 = -40.48 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:07 2006