Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 14,453,358 – 14,453,478 |
Length | 120 |
Max. P | 0.983338 |
Location | 14,453,358 – 14,453,478 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.25 |
Mean single sequence MFE | -31.64 |
Consensus MFE | -29.40 |
Energy contribution | -29.48 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.06 |
Mean z-score | -1.74 |
Structure conservation index | 0.93 |
SVM decision value | 1.94 |
SVM RNA-class probability | 0.983338 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14453358 120 + 27905053 CCAAUUGUCGGCGAUAAAACACACAAAGACUUAUCGGCCAAGUCAAUCGCUAAUGCCCCAAAACAAGUAGUUGCAUGUGCUUGGCUCAAAGUUGGUGGUAAUACGAGUAUUAGCCGAAAA .......(((((.........(((...(((((...(((((((.((...((...(((..........)))...))...)))))))))..))))).))).(((((....))))))))))... ( -32.50) >DroSec_CAF1 10551 120 + 1 CCAAUUGUCGGCGAUAAAACACACAACGACUUAUCGGCCAAGUCAAUCGCUAAUGCCCCAAAACAAGUAGUUGCAUGUGCUUGGCUCAAAGUUGGUGGUAAUACGAGUAUUAGCCGAAAA .......(((((.........(((..((((((...(((((((.((...((...(((..........)))...))...)))))))))..))))))))).(((((....))))))))))... ( -32.30) >DroSim_CAF1 11128 120 + 1 CCAAUUGUCGGCGAUAAAACACACAACGACUUAUCGGCCAAGUCAAUCGCUAAUGCCCCAAAACAAGUAGUUGCAUGUGCUUGGCUCAAAGUUGGUGGUAAUACGAGUAUUAGCCGAAAA .......(((((.........(((..((((((...(((((((.((...((...(((..........)))...))...)))))))))..))))))))).(((((....))))))))))... ( -32.30) >DroEre_CAF1 10288 120 + 1 CCAAUUGUUGGCGAUAAAACACACAAAGACUUAUCGGCCAAGUCAAUCGCUAAUGCCCCAAAACAAGUAGUUGCAUGUGCUUGGCUCAAAGUUGGAGCUAAUACGAGUAUUAGCCGAGAA ((((((.((((((((((.............))))))((((((.((...((...(((..........)))...))...)))))))))))))))))).(((((((....)))))))...... ( -30.42) >DroYak_CAF1 11667 119 + 1 CCAAUUGUCGGCGAUAAAACAUACAAAGACUUAUCGGCCAAGUCAAUCGCUAAUGCCCCA-AACAAGUAGUUGCAUGUGCUUGGCUCAAAGUUGGGGGUAAUACGAGUAUUAGCCGAAAA .......(((((...............(((((.......)))))..(((.((.((((((.-..((((((........))))))((.....))..)))))).)))))......)))))... ( -30.70) >consensus CCAAUUGUCGGCGAUAAAACACACAAAGACUUAUCGGCCAAGUCAAUCGCUAAUGCCCCAAAACAAGUAGUUGCAUGUGCUUGGCUCAAAGUUGGUGGUAAUACGAGUAUUAGCCGAAAA .......(((((.........(((...(((((...(((((((.((...((...(((..........)))...))...)))))))))..))))).))).(((((....))))))))))... (-29.40 = -29.48 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:57 2006