Locus 5476

Sequence ID 3R_DroMel_CAF1
Location 14,452,195 – 14,452,306
Length 111
Max. P 0.898276
window8925

overview

Window 5

Location 14,452,195 – 14,452,306
Length 111
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 88.65
Mean single sequence MFE -29.46
Consensus MFE -24.56
Energy contribution -24.84
Covariance contribution 0.28
Combinations/Pair 1.07
Mean z-score -1.77
Structure conservation index 0.83
SVM decision value 1.00
SVM RNA-class probability 0.898276
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14452195 111 - 27905053
GAACAAAUCACGAGCAGCAAACUGCUGU-----UAAAAUGUUAAGAGAAGUCUUAACCAGAUCGACUAAUGAUUCGGUUAGAGACCGA----UUGCAAGACAGGUGUGGUGCGGUUCCAU
((((..((((((((((((.....)))))-----)....((((..((...(((((((((..((((.....))))..)))).)))))...----))....))))..))))))...))))... ( -31.20)
>DroSec_CAF1 9390 107 - 1
GAACAAAUCACGAGCAGCAAACUGCUGU-----UAAA--------AGAAGUCUUAACCAGAUCGACUAAUGAUUCGGUUAGAGACCGAUUGAUUGCAAGACAGGUGUGGUGCGGUUCCAU
((((.(((((((((((((.....)))))-----)...--------....(((((((((..((((.....))))..)))).)))))))..)))))(((..((....))..))).))))... ( -30.60)
>DroSim_CAF1 9970 107 - 1
GAACAAAUCACGAGCAGCAAACUGCUGU-----UAAA--------AGAAGUCUUAACCAGAUCGACUAAUGAUUCGGUUAGAGACCGAUUGAUUGCAAGACAGGUGUGGUGCGGUUUCAU
.....((((...((((((.....)))))-----)...--------....(((((((((..((((.....))))..)))).))))).))))(((((((..((....))..))))))).... ( -29.30)
>DroEre_CAF1 9163 108 - 1
GAACAAAUCACGAGCAGCAAACUGCUCCCAACAUAAA--------AGAAGUCUUAACCAGAUCGACUAAUGAUUCGCUUGGAGACUGA----UUGCCAGACAGGUGUGGUGCGCUUCCAA
...........((((((....))))))..........--------.(((((....(((((((((.....)))))((((((....(((.----....))).))))))))))..)))))... ( -25.40)
>DroYak_CAF1 10522 103 - 1
GAACAAAUCACGAGCAGCAAACUGCUGU-----UAAA--------AGAAGUCUUAACCAGAUCGACUAAUGAUUCGGUUAGAGACUGA----UUGCAAAACAGGUGUGGUGCGGCUCCGU
...........((((.(((.((..((((-----(..(--------(..((((((((((..((((.....))))..)))).))))))..----))....)))))..))..))).))))... ( -30.80)
>consensus
GAACAAAUCACGAGCAGCAAACUGCUGU_____UAAA________AGAAGUCUUAACCAGAUCGACUAAUGAUUCGGUUAGAGACCGA____UUGCAAGACAGGUGUGGUGCGGUUCCAU
((((..(((((((((((....))))).......................(((((((((..((((.....))))..))))).))))...................))))))...))))... (-24.56 = -24.84 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:53 2006