| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 14,450,842 – 14,450,956 |
| Length | 114 |
| Max. P | 0.716913 |
| Location | 14,450,842 – 14,450,956 |
|---|---|
| Length | 114 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 84.73 |
| Mean single sequence MFE | -36.14 |
| Consensus MFE | -22.65 |
| Energy contribution | -26.21 |
| Covariance contribution | 3.56 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.575075 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14450842 114 + 27905053 UGGUUUGUUAGCCACCUAAAUCGCCGGACUGC------UGCAGCUAGGUGCGUUUGUCAUUUACCAACUGAAAAUGCAUCGCCUUAGUUUCUUGGCUGCAUGAUUUGCUGCAGCUGGCUA (((((....)))))........((((....((------((((((..(((((((((.(((.........))))))))))))(((..........)))..........)))))))))))).. ( -38.50) >DroSec_CAF1 8086 120 + 1 UGGUUUGUUAGCCACCUAAAUCGCCGGACUGCUGCUGCUGCAGCUAGGUGCGUUUGUCAUUUGCCAACUGAAAAUGCAUCGCCUUAGUUUCUUGGCUGCAUGAUUUGCUGCAGCUGGCUA (((((....)))))........(((((.((((.((..((((((((((((((((((.(((.........))))))))))))((....))....)))))))).)....)).))))))))).. ( -43.00) >DroSim_CAF1 8655 120 + 1 UGGUUUGUUAGCCACCUAAAUCGCCGGACUGCUGCUGCUGCAGCUAGGUGCGUUUGUCAUUUACCAACUGAAAAUGCAUCGCCUUAGUUUCUUGGCUGCAUGAUUUGCUGCAGCUGGCUA (((((....)))))........(((((.((((.((..((((((((((((((((((.(((.........))))))))))))((....))....)))))))).)....)).))))))))).. ( -43.00) >DroEre_CAF1 7895 92 + 1 UGGUUUGUUAGCCACCUAAAUCCCCGGACU---------GCAGCUAAGAGCGUUUGUCAUUUACCA-------------------AGUUUCUUGGCUGCAUGAUUUGCUGCUGCUGGCUA ........((((((......((....))..---------(((((....((((...(((((.(((((-------------------((...))))).)).))))).))))))))))))))) ( -27.10) >DroYak_CAF1 8740 111 + 1 UGGUUUGUUAGCCACCCAAAUUCCCGGACU---------GCAGCUAAGAGCGUUUGUGAUUUACCAUCUGAAAAUGCAUCACCUUAGUUUCUGGGCUGCAUGAUUUGCUGCUGCUGGCUA ........((((((.........(((((..---------..(((((((.((((((..(((.....)))...)))))).....))))))))))))((.(((.....))).))...)))))) ( -29.10) >consensus UGGUUUGUUAGCCACCUAAAUCGCCGGACUGC______UGCAGCUAGGUGCGUUUGUCAUUUACCAACUGAAAAUGCAUCGCCUUAGUUUCUUGGCUGCAUGAUUUGCUGCAGCUGGCUA (((((....)))))........(((((.((((......(((((((((((((((((................)))))))............)))))))))).........))))))))).. (-22.65 = -26.21 + 3.56)
| Location | 14,450,842 – 14,450,956 |
|---|---|
| Length | 114 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 84.73 |
| Mean single sequence MFE | -32.96 |
| Consensus MFE | -21.77 |
| Energy contribution | -22.27 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.716913 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14450842 114 - 27905053 UAGCCAGCUGCAGCAAAUCAUGCAGCCAAGAAACUAAGGCGAUGCAUUUUCAGUUGGUAAAUGACAAACGCACCUAGCUGCA------GCAGUCCGGCGAUUUAGGUGGCUAACAAACCA ((((((((((((((.....((((((((..........)))..))))).....(((.((.....)).))).......))))))------))...((.........))))))))........ ( -34.10) >DroSec_CAF1 8086 120 - 1 UAGCCAGCUGCAGCAAAUCAUGCAGCCAAGAAACUAAGGCGAUGCAUUUUCAGUUGGCAAAUGACAAACGCACCUAGCUGCAGCAGCAGCAGUCCGGCGAUUUAGGUGGCUAACAAACCA (((((.((((((........))))))............(((.(((((((((....)).))))).))..)))((((((((((....)))))((((....))))))))))))))........ ( -36.60) >DroSim_CAF1 8655 120 - 1 UAGCCAGCUGCAGCAAAUCAUGCAGCCAAGAAACUAAGGCGAUGCAUUUUCAGUUGGUAAAUGACAAACGCACCUAGCUGCAGCAGCAGCAGUCCGGCGAUUUAGGUGGCUAACAAACCA (((((.((((((........))))))............(((.(((((((((....)).))))).))..)))((((((((((....)))))((((....))))))))))))))........ ( -36.60) >DroEre_CAF1 7895 92 - 1 UAGCCAGCAGCAGCAAAUCAUGCAGCCAAGAAACU-------------------UGGUAAAUGACAAACGCUCUUAGCUGC---------AGUCCGGGGAUUUAGGUGGCUAACAAACCA ((((((((((((((...((((...((((((...))-------------------))))..)))).....)))....)))))---------((((....))))....))))))........ ( -28.50) >DroYak_CAF1 8740 111 - 1 UAGCCAGCAGCAGCAAAUCAUGCAGCCCAGAAACUAAGGUGAUGCAUUUUCAGAUGGUAAAUCACAAACGCUCUUAGCUGC---------AGUCCGGGAAUUUGGGUGGCUAACAAACCA (((((....(((........))).(((((((..((..((...((((......(((.....)))......((.....)))))---------)..)).))..))))))))))))........ ( -29.00) >consensus UAGCCAGCUGCAGCAAAUCAUGCAGCCAAGAAACUAAGGCGAUGCAUUUUCAGUUGGUAAAUGACAAACGCACCUAGCUGCA______GCAGUCCGGCGAUUUAGGUGGCUAACAAACCA ((((((.((((.(((.....))).(((((.........((...))........)))))...........)))((..(((((.......)))))..)).......).))))))........ (-21.77 = -22.27 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:43 2006