Locus 5470

Sequence ID 3R_DroMel_CAF1
Location 14,449,694 – 14,449,814
Length 120
Max. P 0.677573
window8911

overview

Window 1

Location 14,449,694 – 14,449,814
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 93.26
Mean single sequence MFE -32.96
Consensus MFE -27.48
Energy contribution -28.32
Covariance contribution 0.84
Combinations/Pair 1.03
Mean z-score -1.40
Structure conservation index 0.83
SVM decision value 0.30
SVM RNA-class probability 0.677573
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14449694 120 + 27905053
GUUUCAAUUGCAGCACUUUUUGCCCGCCUGUUGGUGCCAGCAAACCGCAAACUAAACAAGUCGCCGGGAUUGCCGGCAGAAAUGUACAUAUUUUUUAUUCCGGGGCAAAAUCAAUUGGCA
...(((((((.......((((((((((.(((((....)))))....)).......(((..(((((((.....))))).))..))).................)))))))).))))))).. ( -33.90)
>DroSec_CAF1 6938 119 + 1
GUUUCAAUUGCAGCACUUUUUGCCCGCCUGUUUUUGCCAGCAAACUGCAAACUA-ACAAGUCGCCGGGAUUGCCGGCAGAAAUGUACAUAUUUUUUAUUCCGGGGCAAAAUCAAUUGGCA
...(((((((.......((((((((....(((((((((.((((.(((...(((.-...)))...)))..)))).)))))))))....(((.....)))....)))))))).))))))).. ( -31.70)
>DroSim_CAF1 7527 119 + 1
GUUUCAAUUGCAGCACUUUUUGCCCGCCUGUUGGUGCCAGCAAACUGCAAACUA-ACAAGUCGCCGGGAUUGCCGGCAGAAAUGUACAUAUUUUUUAUUCCGGGGCAAAAUCAAUUGGCA
...(((((((.......((((((((((.(((((((..(((....)))...))))-))).)).(((((.....))))).........................)))))))).))))))).. ( -35.20)
>DroEre_CAF1 6780 112 + 1
GUUUCAAUUGCAGCACUUUUUGCCCGCCUGUUGGUGCCAGCAAA-------CUA-ACAAGUCGCCGGGAUUGCCGGCAGAAAUGUACAUAUUUUUUAUUCCGGGGCAAAAUCAAUUGGCA
...(((((((.......((((((((((.(((((((........)-------)))-))).)).(((((.....))))).........................)))))))).))))))).. ( -33.20)
>DroYak_CAF1 7624 110 + 1
GUUUCGAUUGCAGCAAUUUU--GCCGCCUGUUGGUGCCAGCAAA-------CUA-ACAAGUCGCCGGGAUUGCCGUCAGAAAUGUACAUAUUUUUUAUUCCGGGGCAAAAUCAAUUGGCA
...(((((((.....(((((--(((((.(((((((........)-------)))-))).))..(((((((....((((....)).)).........)))))))))))))))))))))).. ( -30.82)
>consensus
GUUUCAAUUGCAGCACUUUUUGCCCGCCUGUUGGUGCCAGCAAAC_GCAAACUA_ACAAGUCGCCGGGAUUGCCGGCAGAAAUGUACAUAUUUUUUAUUCCGGGGCAAAAUCAAUUGGCA
...(((((((.......((((((((...(((((....))))).............(((..(((((((.....))))).))..))).................)))))))).))))))).. (-27.48 = -28.32 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:39 2006