Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,044,538 – 2,044,643 |
Length | 105 |
Max. P | 0.833881 |
Location | 2,044,538 – 2,044,643 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 74.68 |
Mean single sequence MFE | -14.24 |
Consensus MFE | -5.36 |
Energy contribution | -8.44 |
Covariance contribution | 3.08 |
Combinations/Pair | 1.04 |
Mean z-score | -1.95 |
Structure conservation index | 0.38 |
SVM decision value | 0.72 |
SVM RNA-class probability | 0.833881 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2044538 105 + 27905053 CUCCACUCUAAUUGAAUUUCUCAGCACUCUCAUUCUUCAUUUAUAAAAUAUCCUAUUUUUAUUUUUGAAGGAUAACGCUUGAAAUUGCUAUCC-----CACCUUCAGACU ..............((((((..(((......((((((((...((((((........))))))...))))))))...))).)))))).......-----............ ( -15.20) >DroSec_CAF1 187740 109 + 1 CUCUGCUCUAAUUGAAUUUCUCAGCAGUAUCAUUCUUCACUUAUAAAAUAUCCUCUUUUUAUUUUUGAAGGAUAACGCUUGAAAUUUGUAUCCCAUCCCACCUUUAAAC- .............(((((((..(((.((...((((((((...((((((........))))))...)))))))).))))).)))))))......................- ( -16.90) >DroSim_CAF1 192640 109 + 1 CUCUGCUCUAAUUGAAUUUCUCAGCAGUAUCAUUCUUCACUUAUAAAAUAUCCUCUUUUUAUUUUUGAAGGAUAACGCUUGAAAUUUGUAUCCCACCCCACCUUUAAAC- .............(((((((..(((.((...((((((((...((((((........))))))...)))))))).))))).)))))))......................- ( -16.90) >DroEre_CAF1 187875 103 + 1 CUCUGCUCUAAUUGAAUUUCUCAGCACGCUCAUUGUUCAUUUAUAAAAUAUCCUGUUUUAAUUUCCUUGGGUUAACGCUUGAAAUUGUUUUCC-------CUAUCGGAAA ........(((.(((((.....((....))....))))).)))((((((.....)))))).(((((..(((..((((........))))..))-------)....))))) ( -14.60) >DroYak_CAF1 191183 90 + 1 CUCUGCUCUAAUUGAAUUUCUCAGCAA--------------UAUAAAAUAUUUCUCCUUAAUU-CAUAUAGAUACCGCUUGAAAUUGUUAUCCUA-----CGUUCUGAAG .((.((((((..((((((....((.((--------------(((...))))).))....))))-))..))))....))..)).............-----.......... ( -7.60) >consensus CUCUGCUCUAAUUGAAUUUCUCAGCACUAUCAUUCUUCACUUAUAAAAUAUCCUCUUUUUAUUUUUGAAGGAUAACGCUUGAAAUUGGUAUCC_A___CACCUUCAGAC_ ..............((((((..(((......((((((((...((((((........))))))...))))))))...))).))))))........................ ( -5.36 = -8.44 + 3.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:45 2006