Locus 5468

Sequence ID 3R_DroMel_CAF1
Location 14,447,000 – 14,447,110
Length 110
Max. P 0.586387
window8902

overview

Window 2

Location 14,447,000 – 14,447,110
Length 110
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 86.61
Mean single sequence MFE -33.52
Consensus MFE -26.44
Energy contribution -26.64
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.53
Structure conservation index 0.79
SVM decision value 0.11
SVM RNA-class probability 0.586387
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14447000 110 - 27905053
AGUGCAAGUAGUGCGGCGCCAGCGAUCAAAUAAACAAACGCGCAGCCGCCAAUUCACGUUUAGUUUCAAUUUGAACGCCGCGCAUGCGCGUGUACCAAAAAAAUUCGCGC----------
.(((((....(((((((((..(((.(((((((((((((((.(.(........).).))))).))))..)))))).))).)))).))))).)))))...............---------- ( -32.80)
>DroSec_CAF1 4151 109 - 1
AGUGCAAGUUGUGCGGCGCCAGCGAUCAAAUAAACAAACGCGCAGCCGCCAAUUCACGUUUAGUUUCAAUUUGAACGCCGCGCAUGCGCGUGUAC-AAAAAAAUUCGCGC----------
.((((.(((((.(((((....(((..............)))...))))))))))..(((((((.......)))))))..))))..(((((.((..-......)).)))))---------- ( -34.34)
>DroSim_CAF1 4466 109 - 1
AGUGCAAGUUGUGCGGCGCCAGCGAUCAAAUAAACAAACGCGCAGCCGCCAAUUCACGUUUAGUUUCAAUUUGAACGCCGCGCAUGCGCGUGUAC-AAAAAAAUUCGCGC----------
.((((.(((((.(((((....(((..............)))...))))))))))..(((((((.......)))))))..))))..(((((.((..-......)).)))))---------- ( -34.34)
>DroEre_CAF1 4078 113 - 1
-----AAGCAGUGCGGCGCCACCGAUCAAAUAAACAAACGCGCAGCCGCCAAACCUCGUUUAGUUUCAAUUUGAACGCCGCGCAUGCGCGUGUAG-A-AAAAUUUCGCGCGCUCCGGAGU
-----..(((((((((((.......(((((((((((((((.(............).))))).))))..)))))).)))))))).)))((((((.(-(-(....)))))))))........ ( -34.10)
>DroYak_CAF1 4293 113 - 1
-----AAGCAGUGCGCCGCCACCGAUCAAAUAAACAAACGCGCAGCUGCCAAACCACGUUUAGUUUCAAUUUGAACGCCGCGCAUGCGCGUGUAG-A-AAAAAUUCGCGCGCUUCGCCGU
-----..(((((((((.......................))))).)))).......(((((((.......)))))))..(((...(((((((...-.-.......)))))))..)))... ( -32.00)
>consensus
AGUGCAAGUAGUGCGGCGCCAGCGAUCAAAUAAACAAACGCGCAGCCGCCAAUUCACGUUUAGUUUCAAUUUGAACGCCGCGCAUGCGCGUGUAC_AAAAAAAUUCGCGC__________
..........((((((((....)(.(((((((((((((((.(............).))))).))))..)))))).))))))))..(((((...............))))).......... (-26.44 = -26.64 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:31 2006