| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 14,445,610 – 14,445,750 |
| Length | 140 |
| Max. P | 0.887979 |
| Location | 14,445,610 – 14,445,710 |
|---|---|
| Length | 100 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 86.24 |
| Mean single sequence MFE | -35.70 |
| Consensus MFE | -28.91 |
| Energy contribution | -28.73 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.95 |
| SVM RNA-class probability | 0.887979 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14445610 100 - 27905053 AUACGUGCGCAAAGUUGCGUUUUAAGUAUAUUUGUGUAUCGUAGCGAAA--------GUACGCAAAGCGAUGGUUCCAUCGCGGAUUCGUCCACG------------UCCGUCAGGCUCU .((((((((((((..(((.......)))..)))))))).))))((....--------))..((...((((((....))))))((((........)------------))).....))... ( -32.60) >DroSec_CAF1 2763 100 - 1 AUACGUGCGCAAAGUUGCGUUUUAAGUAUAUUUGUGUAUCGUAGCGAAA--------GUACGUAAAGCGAUGGUUCCAUCGCGGAUUCGUCCACG------------UCCGUCAGGCUCC .((((((((((((..(((.......)))..)))))))).))))((....--------))((((...((((((....))))))(((....))))))------------)((....)).... ( -32.60) >DroEre_CAF1 2713 120 - 1 AUACGUGCGCAAAGUUGCGUUUUAAGUAUAUUUGUGUAUCGUAGCGAAAGUACGAAAGUACGCAAAGCGGUGGUUCCACCGCGGAUUCGUCCACGUCCACGUCCACGUCCACCAGGCUGC .((((((((((((..(((.......)))..)))))))).))))(((...((((....))))((...((((((....))))))(((..(((..(((....)))..)))))).....))))) ( -43.50) >DroYak_CAF1 2885 108 - 1 AUACGUGCACAAAGUUGCGUUUUAAGUAUAUUUGUGUAUCGUAGCGAAAGUACGAAAGUACGCAAAGCGAUGGUUCCACCGCGGAUUCGUCCACG------------UCCGUCAGGCUCC .((((((((((((..(((.......)))..)))))))).))))((....((((....)))).....))(((((......((.(((....))).))------------.)))))....... ( -34.10) >consensus AUACGUGCGCAAAGUUGCGUUUUAAGUAUAUUUGUGUAUCGUAGCGAAA________GUACGCAAAGCGAUGGUUCCACCGCGGAUUCGUCCACG____________UCCGUCAGGCUCC .((((((((((((..(((.......)))..)))))))).))))((.....................((((((....))))))(((....))).......................))... (-28.91 = -28.73 + -0.19)
| Location | 14,445,638 – 14,445,750 |
|---|---|
| Length | 112 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 86.24 |
| Mean single sequence MFE | -35.25 |
| Consensus MFE | -23.11 |
| Energy contribution | -26.43 |
| Covariance contribution | 3.31 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.23 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.56 |
| SVM RNA-class probability | 0.780973 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14445638 112 - 27905053 AAUGCCUCGCCAUCGGAUGCGACAACGUCCGAAAUCCCAAAUACGUGCGCAAAGUUGCGUUUUAAGUAUAUUUGUGUAUCGUAGCGAAA--------GUACGCAAAGCGAUGGUUCCAUC ...(((((((..(((((((......))))))).........((((((((((((..(((.......)))..)))))))).))))(((...--------...)))...)))).)))...... ( -34.90) >DroSec_CAF1 2791 97 - 1 AAU---------------GCGACACCGUCCGAAAUCCCAAAUACGUGCGCAAAGUUGCGUUUUAAGUAUAUUUGUGUAUCGUAGCGAAA--------GUACGUAAAGCGAUGGUUCCAUC .((---------------(.((.(((((((...........((((((((((((..(((.......)))..)))))))).))))((....--------)).......).))))))))))). ( -26.00) >DroEre_CAF1 2753 120 - 1 AAUGCCUCGGCAUCGGAUGCGACACCGUCCGAAAUCCCAAAUACGUGCGCAAAGUUGCGUUUUAAGUAUAUUUGUGUAUCGUAGCGAAAGUACGAAAGUACGCAAAGCGGUGGUUCCACC ..(((....)))(((((((......))))))).........((((((((((((..(((.......)))..)))))))).))))((....((((....)))).....))((((....)))) ( -41.30) >DroYak_CAF1 2913 120 - 1 AAUGCCUCGGCAUCGGAUGCGACGCCGUCCGAAAUCCCAAAUACGUGCACAAAGUUGCGUUUUAAGUAUAUUUGUGUAUCGUAGCGAAAGUACGAAAGUACGCAAAGCGAUGGUUCCACC ..(((....)))(((((((......)))))))....(((..((((((((((((..(((.......)))..)))))))).))))((....((((....)))).....))..)))....... ( -38.80) >consensus AAUGCCUCGGCAUCGGAUGCGACACCGUCCGAAAUCCCAAAUACGUGCGCAAAGUUGCGUUUUAAGUAUAUUUGUGUAUCGUAGCGAAA________GUACGCAAAGCGAUGGUUCCACC ............(((((((......))))))).........((((((((((((..(((.......)))..)))))))).))))((....((((....)))).....))((((....)))) (-23.11 = -26.43 + 3.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:26 2006