Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 14,444,696 – 14,444,814 |
Length | 118 |
Max. P | 0.549698 |
Location | 14,444,696 – 14,444,814 |
---|---|
Length | 118 |
Sequences | 4 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 89.83 |
Mean single sequence MFE | -15.81 |
Consensus MFE | -11.72 |
Energy contribution | -12.22 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -1.56 |
Structure conservation index | 0.74 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.549698 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14444696 118 - 27905053 UAACUUCCUAAAGCCGAGCAACUUGGCUUACCUAAUGGCCAAAAACCAAUUACAGUCAUCAUCACAGUCAUUCAUUUAACACCCAAAAACAAAAUUCGGCCCAAGUUCACUAAUUGCC .(((((....((((((((...)))))))).......((((..............((.......)).((.(......).)).................)))).)))))........... ( -15.10) >DroSec_CAF1 1845 118 - 1 UAACUUCCCAAAGCCGAGCAACUUGGCUUACCUAAUGGCCAAAAGCCAAUUACACUCAUCAUCACAGUCAUUCAUUUAACAGCCAAAAACAAAAUUCGGCCCAAGUUCACUAAUUGCC .(((((....((((((((...))))))))......((((.....)))).................................(((.............)))..)))))........... ( -17.32) >DroSim_CAF1 1921 118 - 1 UAACUUCCUAAAGCCGAGCAACUUGGCUUACCUAAUGGCCAAAAACCAAUUACACUCAUCAUCACAGUCAUUCAUUUAACAGCCAAAAACAAAAUUCGGCCCAAGUUCACUAAUUGCC ............((((((....((((((.....((((((...........................))))))........))))))........)))))).................. ( -14.65) >DroEre_CAF1 1831 109 - 1 UAACUUCCUAAAACCCAGCAACUUGGGUUUGCUAAUGGCCAAAAACCAAUUACAUUCAUC---ACAGUCAU------CAGCCCAAAAAACAAAACUCGGCCCAAGUUCACUAAUUGCC .(((((((..((((((((....))))))))(((.(((((.....................---...)))))------.)))................))...)))))........... ( -16.16) >consensus UAACUUCCUAAAGCCGAGCAACUUGGCUUACCUAAUGGCCAAAAACCAAUUACACUCAUCAUCACAGUCAUUCAUUUAACACCCAAAAACAAAAUUCGGCCCAAGUUCACUAAUUGCC .(((((....((((((((...)))))))).......((((.........................................................)))).)))))........... (-11.72 = -12.22 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:18 2006