Locus 5455

Sequence ID 3R_DroMel_CAF1
Location 14,408,368 – 14,408,476
Length 108
Max. P 0.810058
window8877

overview

Window 7

Location 14,408,368 – 14,408,476
Length 108
Sequences 4
Columns 108
Reading direction reverse
Mean pairwise identity 89.25
Mean single sequence MFE -22.69
Consensus MFE -16.33
Energy contribution -16.52
Covariance contribution 0.19
Combinations/Pair 1.15
Mean z-score -2.28
Structure conservation index 0.72
SVM decision value 0.65
SVM RNA-class probability 0.810058
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14408368 108 - 27905053
UACUAAAGUUGGCAAUUUAAGAAUCAGCGUGAUUCAGUUACCUAAUCACCUCACAAUCCAGCUAAUGGAUCCUCUCAUUAGCUCAGGUAAAUGAAUACGCAUAAAUAU
..........................(((((.((((.((((((................(((((((((......))))))))).)))))).)))))))))........ ( -24.13)
>DroSec_CAF1 187080 106 - 1
UACUAAAGUUGGCCAUUUAAAAAUCCGCGUGAUUCAGUUACCUAAUCACCUCACAAUCCAGCUAAUGGAUCC--UCAUUAAGUUAGGUAGAUGAAUACGCAUAAAUAU
..........................(((((.((((.(((((((((.........(((((.....)))))..--.......))))))))).)))))))))........ ( -25.27)
>DroSim_CAF1 179072 106 - 1
UACUAAUGUUGGCCAUUUAAAAAUCCGCGUGAUUCAGUUACCUAAUCACCUCACAAUCCAGCUAAUGGAUCC--UCAUUAAGUCAGGUAGAUGAAUACGCAUAAAUAU
..........................(((((.((((.((((((.((.........(((((.....)))))..--.......)).)))))).)))))))))........ ( -21.37)
>DroEre_CAF1 194374 101 - 1
UACUAAAGCUGGCAAUUUA----UCCGAGUGAUUCGGUUACCUAAUCACCUCGCAAUAUAGCUAAUGGAUCC--ACAUUAAGUCAGGU-GAUGAAUACACAUAAAUAU
........(((((......----..(((((((((.((...)).))))).)))).........(((((.....--.))))).)))))((-(.......)))........ ( -20.00)
>consensus
UACUAAAGUUGGCAAUUUAAAAAUCCGCGUGAUUCAGUUACCUAAUCACCUCACAAUCCAGCUAAUGGAUCC__UCAUUAAGUCAGGUAGAUGAAUACGCAUAAAUAU
..........................(((((.((((.((((((............(((((.....)))))..............)))))).)))))))))........ (-16.33 = -16.52 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:07 2006