| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 14,398,879 – 14,398,981 |
| Length | 102 |
| Max. P | 0.559062 |
| Location | 14,398,879 – 14,398,981 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 76.39 |
| Mean single sequence MFE | -22.75 |
| Consensus MFE | -15.64 |
| Energy contribution | -16.72 |
| Covariance contribution | 1.09 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.02 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.559062 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14398879 102 - 27905053 A----ACCGGGCUAUCGCCAAUAUCUUCGGGGGAUAUAUUUCGGCUGAUUUCUUUCUCCUUUCGAGUGCAAACUACACGAAAAAGUCAAAAAGUCAGCUUAGCGAA .----.........((((..((((((.....)))))).....(((((((((....((..(((((.(((.....))).))))).)).....)))))))))..)))). ( -23.60) >DroSec_CAF1 177614 102 - 1 A----ACCGGACUAUCGCCAAUAUCUUCGGGGGAUAUAUUUUGGCUGAUUUCUUCCUUCUUUCGAGUCCAAACUACACGAAAAAGUCAAAAGGUCAGCUUAACGAA .----..((...((((.((..........)).))))......(((((((((.((.(((.(((((.((.......)).))))))))..)).)))))))))...)).. ( -19.40) >DroSim_CAF1 166908 102 - 1 A----ACCGGACUAUCGCCAAUAUCUUCGGGGGAUAUAUUUUGGCUGAUUUCUUCCUCCUUUCGAGUGCAAACUACACGAAAAAGUCAAAAAGUCAGCUUAGCGAA .----.........((((..((((((.....)))))).....(((((((((........(((((.(((.....))).)))))........)))))))))..)))). ( -23.09) >DroEre_CAF1 184821 91 - 1 A----UCCGAACUAUCGCCAAUAUCUUCAGGGGAUAUUUUUCGGCUGAUU-----------UCGAGUGCAAAUAACACGAAAAAGUCAAAAAGUCAGCUAAGCGAA .----.........((((.(((((((.....)))))))....((((((((-----------(...(((.......)))((.....))...)))))))))..)))). ( -20.30) >DroYak_CAF1 198436 102 - 1 A----UCCGGACUAUCGCCAAUAUCUUCGGGGGAUAUUUGUCGGCUGAUUUCGUUCACCUUUCGAGUGAAAAUUACACGAAAAAGUCAAAAAAUCAGCUAAGCGAA .----.........((((.(((((((.....)))))))....(((((((((........(((((.((((...)))).)))))........)))))))))..)))). ( -24.59) >DroAna_CAF1 164035 94 - 1 GAUUGCCUGGACUGUCGCU-AUAUCUUUGGGCGAUAC---UUGGCCGAUUUUUAGCUUUUU--GGG------CUUCCUAAAAAGUUCAAUAAAGUGGCAAACCGAA ..((((((((..(((((((-.........))))))).---....)))(((((.((((((((--(((------...)))))))))))....))))))))))...... ( -25.50) >consensus A____ACCGGACUAUCGCCAAUAUCUUCGGGGGAUAUAUUUCGGCUGAUUUCUUCCUCCUUUCGAGUGCAAACUACACGAAAAAGUCAAAAAGUCAGCUAAGCGAA ..............((((..((((((.....)))))).....(((((((((........(((((.((.......)).)))))........)))))))))..)))). (-15.64 = -16.72 + 1.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:01 2006