Locus 5451

Sequence ID 3R_DroMel_CAF1
Location 14,395,481 – 14,395,576
Length 95
Max. P 0.615647
window8870

overview

Window 0

Location 14,395,481 – 14,395,576
Length 95
Sequences 3
Columns 95
Reading direction forward
Mean pairwise identity 80.57
Mean single sequence MFE -29.00
Consensus MFE -16.00
Energy contribution -16.23
Covariance contribution 0.24
Combinations/Pair 1.27
Mean z-score -2.46
Structure conservation index 0.55
SVM decision value 0.17
SVM RNA-class probability 0.615647
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14395481 95 + 27905053
CCUUUUCGGCUCGGCUGGCUCUGCUUAGCUUACACACAAGGAAAAAUUAUUUUCCAAUUAGAGCGGAGUGAGUGGUGAGGUGAAAGUAAAGUAAG
..((((((.(((((((.(((((((((.(......)....((((((....)))))).....))))))))).)))..)))).))))))......... ( -30.30)
>DroSec_CAF1 174275 93 + 1
CCUUUUCGGCUCCGCUGGCUCUGCUCAGCUUACACACAAAGAAAAAUUAUUUUCCAAUUAGGGCGGAGUGAGUGGUAAGGUGAAAGUAAAUC--C
..((((((.(((((((.(((((((((.(......).....(((((....)))))......))))))))).)))))..)).))))))......--. ( -29.10)
>DroYak_CAF1 194739 87 + 1
CCUUUUCGG----GUUUGCUCCGCUCAGCUUACACCCAAAGAAAAAUUAUUUCUCAAUUAG-GCGGAGUGAGUCGUUAGGAGGAAGCC-CUC--C
.......((----((((.((((...(.((((((.(((..(((((.....))))).......-).)).)))))).)...)))).)))))-)..--. ( -27.60)
>consensus
CCUUUUCGGCUC_GCUGGCUCUGCUCAGCUUACACACAAAGAAAAAUUAUUUUCCAAUUAG_GCGGAGUGAGUGGUAAGGUGAAAGUAAAUC__C
..((((((.((..(((.(((((((((.(....)......(((((.....)))))......))))))))).)))....)).))))))......... (-16.00 = -16.23 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:00 2006