Locus 5450

Sequence ID 3R_DroMel_CAF1
Location 14,384,346 – 14,384,444
Length 98
Max. P 0.580075
window8869

overview

Window 9

Location 14,384,346 – 14,384,444
Length 98
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 81.47
Mean single sequence MFE -15.45
Consensus MFE -11.60
Energy contribution -11.77
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -1.29
Structure conservation index 0.75
SVM decision value 0.09
SVM RNA-class probability 0.580075
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14384346 98 - 27905053
CACCAUUCCUCAUUC-CUCAUCCAAUUGCGAUCU-CGACAACGAGUUGU-ACC-AACAGCUUUAUUGCAUUUAUUUGGCACUUUAUUACCGCCAGCUCGUUG
...............-............((....-)).(((((((((..-...-....((......))........(((...........)))))))))))) ( -17.00)
>DroPse_CAF1 175748 92 - 1
--UCAUUC-CCA-UC-CCCAUCCGA----CAUCUCCGACAACGAGCCAUUUCC-AACAGCUUUAUUGCAUUUAUUUGGCACUUUAUUACCUCCAGCUCGUUG
--......-...-..-.........----.........((((((((.......-....((......)).......(((.............))))))))))) ( -13.92)
>DroSim_CAF1 157813 91 - 1
CGCCAU-------UC-CUCAUCCAAUUGCGAUCU-CGACAACGAGUUGU-ACC-AACAGCUUUAUUGCAUUUAUUUGGCACUUUAUUACCGCCAGCUCGUUG
(((.((-------(.-.......))).)))....-...(((((((((..-...-....((......))........(((...........)))))))))))) ( -19.10)
>DroEre_CAF1 170719 83 - 1
----------------CCCCACCAAUUGCGAUCU-CGACAACGACUUGU-ACC-AACAGCUUUAUUGCAUUUAUUUGGCACUUUAUUACCGCCAGCUCGUUG
----------------..........(((((..(-((....))).))))-).(-(((.((......))......(((((...........)))))...)))) ( -12.60)
>DroYak_CAF1 182937 91 - 1
-CCCAU-------UCCCCCUUCCAAUUGCGAGUU-CGACAACGACUUGU-ACC-AACAGCUUUAUUGCAUUUAUUUGGCACUUUAUUACCGCCAGCUCGUUG
-.....-------.............(((((((.-((....))))))))-).(-(((.((......))......(((((...........)))))...)))) ( -16.50)
>DroAna_CAF1 149429 82 - 1
------------------CAACCAAUUCCGAUUU-CGACAACGACUUGU-UCCGAACAGCUUUAUUGCAUUUAUUUGGCACUUUAUUACCGCCAGUUCGUUG
------------------((((............-.(((((....))))-)..((((.((......)).......((((...........)))))))))))) ( -13.60)
>consensus
__CCAU_______UC_CCCAUCCAAUUGCGAUCU_CGACAACGACUUGU_ACC_AACAGCUUUAUUGCAUUUAUUUGGCACUUUAUUACCGCCAGCUCGUUG
......................................((((((..............((......))......(((((...........))))).)))))) (-11.60 = -11.77 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:59 2006